PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026415262.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 838aa MW: 91734.5 Da PI: 5.372

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026415262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.8	1.8e-08	84	111	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC+f++r C++G++C++aH++ XP_026415262.1 84 WKTSLCSFYRRQDkDCSHGENCRYAHSE 111 8*******9669**********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MATTLPETAT SQSQTLIPSP IEIDTDSSIG GNLKSEEIRS TNGGDSVDKL TEKHPGNDDE 60 TQGDKRKREG EDEEGETKAR HPMWKTSLCS FYRRQDKDCS HGENCRYAHS EEELRPRPDN 120 SWDPTSERAK KIMKLENGDN IVGKDDVRED VFMPDALVDS LDPSLDKCLL NLPKKWISDD 180 LKSFMDELGV VYKTARKKTG MAVGFVGFET ADLVKAGIER MDGKAIGNRH VKVANVVPRT 240 FEKKAMLTVP DSDDPDGPLS INGSEDGNAV PRARTVRDAV TPLAHMSYSD QLEHKKNSLA 300 QTLKRLTRHA RKACSGGVTL PEWILKSKEI GGLPCKLEGI VESPLVKGYR NKCEFSVGLS 360 VQGKPTVGFM LGNFREGVTA VEEPVDCPNV SQISCKLASI FQGYLQHSAL PVWNRIDNTG 420 FWRQLTVREG RNPGSNYDIE NFEANISEVM VMVQVCTTGI DKEVLTKEFQ SMALAFSEGV 480 SASSPPLPLT SLVVQDHTGI SNVAPADAPL KPLSMLKAKS ASGEESESSV VEGIHDYIGN 540 QRFCISPTAF FQVNTLAAEK LYSLAGDWAG LGPDTLLFDV CCGTGTIGLT LAHRVGMVVG 600 IEMNASAVLD AKRNAEINNI KNCRFICSKA EDVMGSLLKE YIDVAIEKEE PLRVSETNDS 660 GDASGQKESS LDGKVDLESI SNETSEANNE SGCPQICQEE VKGRIQTICS SEDQNGRNGS 720 LMRQYKDVVA IVDPPRAGLH PTVIKALRTH PSLRRIVYIS CNPESLVANA IELCTPSTDK 780 SEKGNTNNRG WRNRSVAGQA RQRAKSMPTS EPYQPIKAMA VDLFPHTPHC ETVMLLER

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MATTLPETAT SQSQTLIPSP IEIDTDSSIG GNLKSEEIRS TNGGDSVDKL TEKHPGNDDE  60
TQGDKRKREG EDEEGETKAR HPMWKTSLCS FYRRQDKDCS HGENCRYAHS EEELRPRPDN  120
SWDPTSERAK KIMKLENGDN IVGKDDVRED VFMPDALVDS LDPSLDKCLL NLPKKWISDD  180
LKSFMDELGV VYKTARKKTG MAVGFVGFET ADLVKAGIER MDGKAIGNRH VKVANVVPRT  240
FEKKAMLTVP DSDDPDGPLS INGSEDGNAV PRARTVRDAV TPLAHMSYSD QLEHKKNSLA  300
QTLKRLTRHA RKACSGGVTL PEWILKSKEI GGLPCKLEGI VESPLVKGYR NKCEFSVGLS  360
VQGKPTVGFM LGNFREGVTA VEEPVDCPNV SQISCKLASI FQGYLQHSAL PVWNRIDNTG  420
FWRQLTVREG RNPGSNYDIE NFEANISEVM VMVQVCTTGI DKEVLTKEFQ SMALAFSEGV  480
SASSPPLPLT SLVVQDHTGI SNVAPADAPL KPLSMLKAKS ASGEESESSV VEGIHDYIGN  540
QRFCISPTAF FQVNTLAAEK LYSLAGDWAG LGPDTLLFDV CCGTGTIGLT LAHRVGMVVG  600
IEMNASAVLD AKRNAEINNI KNCRFICSKA EDVMGSLLKE YIDVAIEKEE PLRVSETNDS  660
GDASGQKESS LDGKVDLESI SNETSEANNE SGCPQICQEE VKGRIQTICS SEDQNGRNGS  720
LMRQYKDVVA IVDPPRAGLH PTVIKALRTH PSLRRIVYIS CNPESLVANA IELCTPSTDK  780
SEKGNTNNRG WRNRSVAGQA RQRAKSMPTS EPYQPIKAMA VDLFPHTPHC ETVMLLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein