PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026414750.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 717aa MW: 78459.2 Da PI: 6.5073

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026414750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	275	295	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg XP_026414750.1 275 PCPEFRK-GTCRLGDGCEYAHG 295 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MCSGSKRKTT PTESSFMEGN QKEGFFPNCS ALLELAASDD VIAFKNSVEV EGCDVNEASL 60 WYGRVIGSRK MGLEERTPLM IAAMYGSTDV LKFILSIGTV DVNQACGSDG TTALHCAAAG 120 GSKTSPEIVK FLLDNSADRN SVDAKGNKPG DLIAPGLRPS CVMRKKALEM MLKGSNGDNF 180 IEEWIPSDDV VDQPEEFQQL MGHKEGSDKK EYPVDLTLPD IKNGIYGTDE FRMYTFKVKP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCPEFR KGTCRLGDGC EYAHGVFECW 300 LHPAQYRTRL CKDETGCTRR VCFFAHKPEE LRPLYASTGS AVPSPRSSGV NLSPLDMSNM 360 SPLALGSPSA MMHSNSTPPM SPLAAGSSPM GGGLWQNQSN LIPPTLQLPG SRLKTAMSAR 420 DMELDMDMLG LSPYHHQQQQ QQQQQMMDEM SNLSSQANWN NTMATAAAMA ASSGGRLGGV 480 KPTNLEDVFG SLDHSLLSQL QSLSIKNGSS SQVNSPTGIQ IRQNMNHQQQ QQQQLRSSYS 540 GNLSSSPVRS PSFGLESSAV AAMSSRSAAF AKQRSQSFID RSAMNRHPGL MGSSAMSTST 600 FSDWGSPTGK LDWGVQGEEL NKLRKSASFG FRTNNTSMGS PPETMASLAH PGDEPDVSWV 660 QSLVKDAPQQ SGSPNRRFSL EEQQIQMQKQ YHLNSGGMDM LSPYMEQLYM EQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MCSGSKRKTT PTESSFMEGN QKEGFFPNCS ALLELAASDD VIAFKNSVEV EGCDVNEASL  60
WYGRVIGSRK MGLEERTPLM IAAMYGSTDV LKFILSIGTV DVNQACGSDG TTALHCAAAG  120
GSKTSPEIVK FLLDNSADRN SVDAKGNKPG DLIAPGLRPS CVMRKKALEM MLKGSNGDNF  180
IEEWIPSDDV VDQPEEFQQL MGHKEGSDKK EYPVDLTLPD IKNGIYGTDE FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCPEFR KGTCRLGDGC EYAHGVFECW  300
LHPAQYRTRL CKDETGCTRR VCFFAHKPEE LRPLYASTGS AVPSPRSSGV NLSPLDMSNM  360
SPLALGSPSA MMHSNSTPPM SPLAAGSSPM GGGLWQNQSN LIPPTLQLPG SRLKTAMSAR  420
DMELDMDMLG LSPYHHQQQQ QQQQQMMDEM SNLSSQANWN NTMATAAAMA ASSGGRLGGV  480
KPTNLEDVFG SLDHSLLSQL QSLSIKNGSS SQVNSPTGIQ IRQNMNHQQQ QQQQLRSSYS  540
GNLSSSPVRS PSFGLESSAV AAMSSRSAAF AKQRSQSFID RSAMNRHPGL MGSSAMSTST  600
FSDWGSPTGK LDWGVQGEEL NKLRKSASFG FRTNNTSMGS PPETMASLAH PGDEPDVSWV  660
QSLVKDAPQQ SGSPNRRFSL EEQQIQMQKQ YHLNSGGMDM LSPYMEQLYM EQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein