PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026414114.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 487aa    MW: 52591.2 Da    PI: 8.1468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026414114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-0979103226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C++++ t tC++ d+CkF H+
  XP_026414114.1  79 GETDCSHYMLTRTCRFADTCKFDHP 103
                     6789********************8 PP

2zf-CCCH261.6e-08130156127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f++t  C++G +CkF+H++
  XP_026414114.1 130 PGEPACPYFLKTKKCRFGFKCKFNHPK 156
                     57899********************96 PP

3zf-CCCH34.53.5e-11180203427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C f+ +tG+Ck+G++CkF+H++
  XP_026414114.1 180 PPCAFYVKTGICKFGESCKFHHPK 203
                     89********************96 PP

4zf-CCCH38.51.9e-12254280127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+f+++tG CkyG++C+++H++
  XP_026414114.1 254 PGEVDCPFYLKTGSCKYGATCRYSHPE 280
                     57899********************96 PP

5zf-CCCH36.67.5e-12340364226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C f+++tG Ck+G+rCk++H+
  XP_026414114.1 340 GQTECAFYMKTGDCKFGERCKYHHP 364
                     6789********************8 PP

6zf-CCCH41.52.2e-13393416427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C+f+++tG CkyG++C+F H+p
  XP_026414114.1 393 VVCPFYMKTGACKYGSSCRFDHPP 416
                     67********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    
MTDIGFLQFH NSPYGHLVLM RLLLSAVVLL VLSVLLPKTY LGTSNTFGQS EAFYSANNLS  60
KRPRFESTSH LPIYPQRPGE TDCSHYMLTR TCRFADTCKF DHPIWVPEGG IPNWKEVPLV  120
PLGDTLPERP GEPACPYFLK TKKCRFGFKC KFNHPKDIAK SVDASKIVDL SLLPERPYAP  180
PCAFYVKTGI CKFGESCKFH HPKDIQIPVT GQENGCAEHD ASVGSFDRIM SVKPPFVPFT  240
PASLHNTKGL PVRPGEVDCP FYLKTGSCKY GATCRYSHPE RAVINISVAP GLGQAMMTSS  300
ASSMNVGLIN PAALVLPTID PRLGQAALGL GVAVYPQRPG QTECAFYMKT GDCKFGERCK  360
YHHPIDRTAA TQPMPKQDVK LTLAGLPRRE GAVVCPFYMK TGACKYGSSC RFDHPPPGEA  420
VAMATVVQGS SSAPPSGEAI AMPTVTQGSS DAAEGGEGNN NNNNNNNEGG GDHTIVPEAA  480
ISFGSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-172C3H family protein