PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026414108.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 494aa MW: 53611.9 Da PI: 8.2079

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026414108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.1	3.6e-09	90	114	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++ t tC++ d+CkF H+ XP_026414108.1 90 GETDCSHYMLTRTCRFADTCKFDHP 114 6789********************8 PP
2	zf-CCCH	26	1.7e-08	141	167	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026414108.1 141 PGEPACPYFLKTKKCRFGFKCKFNHPK 167 57899********************96 PP
3	zf-CCCH	34.5	3.5e-11	187	210	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+ +tG+Ck+G++CkF+H++ XP_026414108.1 187 PPCAFYVKTGICKFGESCKFHHPK 210 89********************96 PP
4	zf-CCCH	38.5	2e-12	261	287	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026414108.1 261 PGEVDCPFYLKTGSCKYGATCRYSHPE 287 57899********************96 PP
5	zf-CCCH	36.6	7.6e-12	347	371	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C f+++tG Ck+G+rCk++H+ XP_026414108.1 347 GQTECAFYMKTGDCKFGERCKYHHP 371 6789********************8 PP
6	zf-CCCH	41.5	2.3e-13	400	423	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026414108.1 400 VVCPFYMKTGACKYGSSCRFDHPP 423 67********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSRCFAGTKR TSSEALYHQT YLGTSNTFGQ 60 SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCSHYMLT RTCRFADTCK FDHPIWVPEG 120 GIPNWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIA KSVIVDLSLL 180 PERPYAPPCA FYVKTGICKF GESCKFHHPK DIQIPVTGQE NGCAEHDASV GSFDRIMSVK 240 PPFVPFTPAS LHNTKGLPVR PGEVDCPFYL KTGSCKYGAT CRYSHPERAV INISVAPGLG 300 QAMMTSSASS MNVGLINPAA LVLPTIDPRL GQAALGLGVA VYPQRPGQTE CAFYMKTGDC 360 KFGERCKYHH PIDRTAATQP MPKQDVKLTL AGLPRREGAV VCPFYMKTGA CKYGSSCRFD 420 HPPPGEAVAM ATVVQGSSSA PPSGEAIAMP TVTQGSSDAA EGGEGNNNNN NNNNEGGGDH 480 TIVPEAAISF GSTS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSRCFAGTKR TSSEALYHQT YLGTSNTFGQ  60
SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCSHYMLT RTCRFADTCK FDHPIWVPEG  120
GIPNWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIA KSVIVDLSLL  180
PERPYAPPCA FYVKTGICKF GESCKFHHPK DIQIPVTGQE NGCAEHDASV GSFDRIMSVK  240
PPFVPFTPAS LHNTKGLPVR PGEVDCPFYL KTGSCKYGAT CRYSHPERAV INISVAPGLG  300
QAMMTSSASS MNVGLINPAA LVLPTIDPRL GQAALGLGVA VYPQRPGQTE CAFYMKTGDC  360
KFGERCKYHH PIDRTAATQP MPKQDVKLTL AGLPRREGAV VCPFYMKTGA CKYGSSCRFD  420
HPPPGEAVAM ATVVQGSSSA PPSGEAIAMP TVTQGSSDAA EGGEGNNNNN NNNNEGGGDH  480
TIVPEAAISF GSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein