PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026414098.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 498aa MW: 54013.3 Da PI: 8.2077

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026414098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.1	3.6e-09	90	114	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++ t tC++ d+CkF H+ XP_026414098.1 90 GETDCSHYMLTRTCRFADTCKFDHP 114 6789********************8 PP
2	zf-CCCH	25.9	1.7e-08	141	167	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026414098.1 141 PGEPACPYFLKTKKCRFGFKCKFNHPK 167 57899********************96 PP
3	zf-CCCH	34.5	3.6e-11	191	214	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+ +tG+Ck+G++CkF+H++ XP_026414098.1 191 PPCAFYVKTGICKFGESCKFHHPK 214 89********************96 PP
4	zf-CCCH	38.4	2e-12	265	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026414098.1 265 PGEVDCPFYLKTGSCKYGATCRYSHPE 291 57899********************96 PP
5	zf-CCCH	36.6	7.7e-12	351	375	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C f+++tG Ck+G+rCk++H+ XP_026414098.1 351 GQTECAFYMKTGDCKFGERCKYHHP 375 6789********************8 PP
6	zf-CCCH	41.5	2.3e-13	404	427	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026414098.1 404 VVCPFYMKTGACKYGSSCRFDHPP 427 67********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSRCFAGTKR TSSEALYHQT YLGTSNTFGQ 60 SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCSHYMLT RTCRFADTCK FDHPIWVPEG 120 GIPNWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIA KSVDASKIVD 180 LSLLPERPYA PPCAFYVKTG ICKFGESCKF HHPKDIQIPV TGQENGCAEH DASVGSFDRI 240 MSVKPPFVPF TPASLHNTKG LPVRPGEVDC PFYLKTGSCK YGATCRYSHP ERAVINISVA 300 PGLGQAMMTS SASSMNVGLI NPAALVLPTI DPRLGQAALG LGVAVYPQRP GQTECAFYMK 360 TGDCKFGERC KYHHPIDRTA ATQPMPKQDV KLTLAGLPRR EGAVVCPFYM KTGACKYGSS 420 CRFDHPPPGE AVAMATVVQG SSSAPPSGEA IAMPTVTQGS SDAAEGGEGN NNNNNNNNEG 480 GGDHTIVPEA AISFGSTS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSRCFAGTKR TSSEALYHQT YLGTSNTFGQ  60
SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCSHYMLT RTCRFADTCK FDHPIWVPEG  120
GIPNWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIA KSVDASKIVD  180
LSLLPERPYA PPCAFYVKTG ICKFGESCKF HHPKDIQIPV TGQENGCAEH DASVGSFDRI  240
MSVKPPFVPF TPASLHNTKG LPVRPGEVDC PFYLKTGSCK YGATCRYSHP ERAVINISVA  300
PGLGQAMMTS SASSMNVGLI NPAALVLPTI DPRLGQAALG LGVAVYPQRP GQTECAFYMK  360
TGDCKFGERC KYHHPIDRTA ATQPMPKQDV KLTLAGLPRR EGAVVCPFYM KTGACKYGSS  420
CRFDHPPPGE AVAMATVVQG SSSAPPSGEA IAMPTVTQGS SDAAEGGEGN NNNNNNNNEG  480
GGDHTIVPEA AISFGSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-180	C3H family protein