PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026413113.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

FAR1

Protein Properties

Length: 667aa MW: 76639.5 Da PI: 7.2838

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026413113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.3e-08	118	197	16	90
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +s+skk+ +g+ + t+ C ++g +++kkk e ++r++ + ++gC +lk + +kw + + HnHel+ XP_026413113.1 118 ISHSKKT-LKGKGSRITLGCERSGWYTDHKKKslqpkpPEPRKRKSRTRKCGCPFQLKCDWVEGNKWTLRVVCGRHNHELS 197 4455554.7777899*******99999999999998888888999999******999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MADVNFGREI MEVDSSSEGS FDSGRHCEST ATQMVDGPIN SSPHMEIIPS VGSPQLDVEP 60 GVDSPQLVET TSITETDSQL ITVDLTPFFV TDQVFDSREA TIEWCQEVGK KKNTVLVISH 120 SKKTLKGKGS RITLGCERSG WYTDHKKKSL QPKPPEPRKR KSRTRKCGCP FQLKCDWVEG 180 NKWTLRVVCG RHNHELSDTL TGHAYAGRLK EEEKQLVLHL TATGVPPQQV LIALKEKSKE 240 NYSTLKTIYN VKSKHRKSQV EGKSAMQQVM ELLAQYHYVE KHRSNEETNE VRDIFWAHPE 300 TMLLAKCFPS VLMVDSTCKT NRFKMPLIHI VGISSTGKLF TVAFAFMEAE TEQHYIWALT 360 QLKWMYMPNT LPSLFVTDRE SALVNAIDIV FPRSSRLLCT WHLNQQVQTN CEKAFEDNEE 420 WEQFHTDWNH VWKAETMDEY GDAYADFATK WAPKYPSCIV YLRDTWLIQK EKFALAWTNK 480 IKHFGNTTTK ADKEHENLRK YLVSAVDSYS SCWKAMHNMI KDEIAQIKLS FELSLTTLNQ 540 EHLSPALEEL RNHVSHKALE LVLFEVHRAD NLGNEESSCS CFLHSTHGLP CAHELVKYVP 600 QGKAIPLLNI DSHWKQLSIV PTQELYNGFD VLPEFQLLRQ RWIEAVEPRR SLLLRKIKDI 660 ATFKPRN

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MADVNFGREI MEVDSSSEGS FDSGRHCEST ATQMVDGPIN SSPHMEIIPS VGSPQLDVEP  60
GVDSPQLVET TSITETDSQL ITVDLTPFFV TDQVFDSREA TIEWCQEVGK KKNTVLVISH  120
SKKTLKGKGS RITLGCERSG WYTDHKKKSL QPKPPEPRKR KSRTRKCGCP FQLKCDWVEG  180
NKWTLRVVCG RHNHELSDTL TGHAYAGRLK EEEKQLVLHL TATGVPPQQV LIALKEKSKE  240
NYSTLKTIYN VKSKHRKSQV EGKSAMQQVM ELLAQYHYVE KHRSNEETNE VRDIFWAHPE  300
TMLLAKCFPS VLMVDSTCKT NRFKMPLIHI VGISSTGKLF TVAFAFMEAE TEQHYIWALT  360
QLKWMYMPNT LPSLFVTDRE SALVNAIDIV FPRSSRLLCT WHLNQQVQTN CEKAFEDNEE  420
WEQFHTDWNH VWKAETMDEY GDAYADFATK WAPKYPSCIV YLRDTWLIQK EKFALAWTNK  480
IKHFGNTTTK ADKEHENLRK YLVSAVDSYS SCWKAMHNMI KDEIAQIKLS FELSLTTLNQ  540
EHLSPALEEL RNHVSHKALE LVLFEVHRAD NLGNEESSCS CFLHSTHGLP CAHELVKYVP  600
QGKAIPLLNI DSHWKQLSIV PTQELYNGFD VLPEFQLLRQ RWIEAVEPRR SLLLRKIKDI  660
ATFKPRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	161	KKKSLQPKPPEPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-20	FAR1 family protein