PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026412492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 721aa MW: 78487.6 Da PI: 6.3079 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 304 | 324 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_026412492.1 304 PCPDFRK-GACRRGDLCEYAHG 324 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence |
MCGGPDSTQS KSSSISPTSS EETKLPTKSM NQLTIDTEES NLLELAANND LDGFKRLIER 60 DASTVDQIGL WYGRQKGSKQ MVLEHRTPLM VAATYGNVDV LKFILSFSEA DVNRSCGPDK 120 STALHCAASG GSINADEVVN LLLLSGANAS SVDANGCRPA DVIVVSPKLP NLKASLETLL 180 SINGSDVSAT ERNLRVSTIC LSSSPSSPEN GSSSSVSDLP DSPTMNVDDL HVSANLEKRE 240 YPIDPSLPDI KNSIYSTDEF RMFSFKIRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY 300 SCVPCPDFRK GACRRGDLCE YAHGVFECWL HPAQYRTRLC KDGTSCTRRV CFFAHTSEEL 360 RPLYMSTGSA VPSPRSSAVA MDMAAAMNLY PASPSSVSTM SSSPFASPMS PSGNNISHSS 420 LAWPQPNVPA LHLPGCNLQS SRLRSSFNAR DIPPEEYSML QEQQQLLSEL SCFSQQQRLN 480 SPSLNSPIRT KTLTSSNLEE LFAAEITRSP RYADRVTSSG GFSPSHKSAV FSQFQQQQSM 540 LSPINTNVFS PKNVDQSMLQ ASYASPGRMS PRSMEPISPG SARLPVFSQR DKHQQQQQLR 600 SLSARDLGSN SSAVVGSPVN PWSKWGSPNG KLDWGVQGDE LGHLQRSNSL EPGHNGVEEP 660 DLSWVHSLVK ESPPEIKGNV MPTSPPASSG EGTNSNLQNE SVDNSVLGAW LEQMQLDQLV 720 A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |