PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026409524.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 337aa MW: 38160.6 Da PI: 5.3787

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026409524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	6	26	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C k+Fs+ L H+++H XP_026409524.1 6 CKICFKRFSNGRALGGHMKSH 26 *******************99 PP
2	zf-C2H2	12.3	0.00052	243	265	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_026409524.1 243 YQCESCKKVFRSYQALGGHRANH 265 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MEKRNCKICF KRFSNGRALG GHMKSHMAIL QTPPKVEQTK FNFQQEQIRN EAESSEEEQG 60 DEEEMKNGLY NGLREHPEKS FRLVDPIFSS STATMEVGNS SSVIIDRESE TDESFKNNTP 120 SLTRRRSKRN RRIPITQKDQ YLTYNEEIHC NIKKMKKLKK AIMKAEAFEP VESEPVSSVS 180 DNTIEEDVAF SLMMLSRDTW IKESDEVSEK SIDIEDDYDS EEEIIKLTSY TSRTAATPTR 240 KKYQCESCKK VFRSYQALGG HRANHSKING CILPSSTIQA DQNLTAAAAA ATNSNTTTST 300 VPISAASKSI KFRDNLIDLN LPAPIEEDDN SEFIDLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	160	RRSKRNRRIPITQKDQYLTYNEEIHCNIKKMKKLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	6e-18	C2H2 family protein