PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026408039.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 728aa MW: 82838.6 Da PI: 5.7728

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026408039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	128	147	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C +f++ G+C GdrC F H XP_026408039.1 128 PCYYFQK-GHCLKGDRCAFLH 147 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MNSGTQESSN PQTTTAEDET SKRNTDCVYF LASPLTCKKG SECEFRHSEE ARMNPRDCWY 60 WMNSNCLNPK CPFRHPPLDG LLGTAATTST RSSMPPSLAA APMQIPTAYN LVTNVGKQMM 120 NPHTQATPCY YFQKGHCLKG DRCAFLHEVF VDNSTLQPPA TKVTNSVSEP QIPKRVGAGL 180 QRCSTQQQKI QQGNFVKPVE LKPVAKPSEN NDFAQIKYGT DVKRSVPQVV NSFREELPRY 240 KPPNSRTVTS ADPVSRTHRS RQAYPMDYPT FQNGKEPDEF LSESSPGFDV LVDDELRDFD 300 YYRNEDDFGR MASHDGRRVS SVNELDHRRS SDYSSVSKFD QETYNGSRGF DPYGRVQDQF 360 HQEKRRPSSE RVTERPVLLE RRGSSRARSP NQIDRSDLRY RLAKQRKVDG SRSAVSPDHR 420 GEFYKRDDRE RDCDRSFGDE RSRDHSRRNP RESSVISNRL QGRIQIPGRS PPDNRYNDSH 480 QEREMHRERH RGRLSPPSRL PTSSIPGRLQ DRIKETTHDS FTADDRSFRT PPVRRDEADN 540 GTLNFAGPKR LAELKGPKVS DENHWKNKET RKLVSYHEAD GALSFDGPKP LDVILKRKRE 600 EGNSGSGDDP VSANEEECRS RRGMPSREEE EGLISAEGDD AAAHEAHSSE PKGVELQDVE 660 HEMVNDKLDD QEFESYDQRD GESDYEPVDG GVDFKTEEDD INAEAEAEED FSDDDGDDFA 720 KRIGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MNSGTQESSN PQTTTAEDET SKRNTDCVYF LASPLTCKKG SECEFRHSEE ARMNPRDCWY  60
WMNSNCLNPK CPFRHPPLDG LLGTAATTST RSSMPPSLAA APMQIPTAYN LVTNVGKQMM  120
NPHTQATPCY YFQKGHCLKG DRCAFLHEVF VDNSTLQPPA TKVTNSVSEP QIPKRVGAGL  180
QRCSTQQQKI QQGNFVKPVE LKPVAKPSEN NDFAQIKYGT DVKRSVPQVV NSFREELPRY  240
KPPNSRTVTS ADPVSRTHRS RQAYPMDYPT FQNGKEPDEF LSESSPGFDV LVDDELRDFD  300
YYRNEDDFGR MASHDGRRVS SVNELDHRRS SDYSSVSKFD QETYNGSRGF DPYGRVQDQF  360
HQEKRRPSSE RVTERPVLLE RRGSSRARSP NQIDRSDLRY RLAKQRKVDG SRSAVSPDHR  420
GEFYKRDDRE RDCDRSFGDE RSRDHSRRNP RESSVISNRL QGRIQIPGRS PPDNRYNDSH  480
QEREMHRERH RGRLSPPSRL PTSSIPGRLQ DRIKETTHDS FTADDRSFRT PPVRRDEADN  540
GTLNFAGPKR LAELKGPKVS DENHWKNKET RKLVSYHEAD GALSFDGPKP LDVILKRKRE  600
EGNSGSGDDP VSANEEECRS RRGMPSREEE EGLISAEGDD AAAHEAHSSE PKGVELQDVE  660
HEMVNDKLDD QEFESYDQRD GESDYEPVDG GVDFKTEEDD INAEAEAEED FSDDDGDDFA  720
KRIGVMFS