PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026407872.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 449aa MW: 48579.3 Da PI: 7.5593

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026407872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	52	77	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_026407872.1 52 PGEPDCIYYLRTGLCGYGTNCRFNHP 77 5789*********************9 PP
2	zf-CCCH	34.6	3.1e-11	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G+ Ck++H++ XP_026407872.1 96 QPDCQYFMKTGTCKFGAICKYNHPR 120 789********************96 PP
3	zf-CCCH	39.3	1.1e-12	141	165	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG Ck+G CkF+H++ XP_026407872.1 141 EKPCPYYMRTGNCKFGIACKFNHPQ 165 689********************97 PP
4	zf-CCCH	37.3	4.5e-12	290	315	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++Ck++H++ XP_026407872.1 290 EQPECQYYMKTGRCKFGPSCKYHHPR 315 5799********************96 PP
5	zf-CCCH	35.7	1.5e-11	336	361	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++ +G+CkyG+ CkF H++ XP_026407872.1 336 GQAVCTYYSLYGICKYGAACKFDHPM 361 7899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MPDNNWQVQN GVSSTSIATS DNLEEAMWQL KIQAQEGQDG IASNPASYPD RPGEPDCIYY 60 LRTGLCGYGT NCRFNHPVYS GQAAQHRGEL PERAGQPDCQ YFMKTGTCKF GAICKYNHPR 120 DRHDAGQIPL NILGLPMRQE EKPCPYYMRT GNCKFGIACK FNHPQPAAAL GAVLPVTGPT 180 AYGSAGSSVT PPSGLPYAGG LPTWSLPRGP SISGQSMQGG PQAYMPVVLS SSQGLLPTQP 240 GWSTYMGTMT PVSSTNVLGS HLVYASKQGE SGPNGQVHSS SFTQYPERPE QPECQYYMKT 300 GRCKFGPSCK YHHPRDKIAP LATNSMSPYG LPLRPGQAVC TYYSLYGICK YGAACKFDHP 360 MAGFYNCGGS MPSLSIPDSS IIPYQRNSLP SQSPETSPSK SSRLPDQTEE SNGKQQDQNI 420 KPPEDPKQDS LSSTNPKSSS LEPLNDLSD

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MPDNNWQVQN GVSSTSIATS DNLEEAMWQL KIQAQEGQDG IASNPASYPD RPGEPDCIYY  60
LRTGLCGYGT NCRFNHPVYS GQAAQHRGEL PERAGQPDCQ YFMKTGTCKF GAICKYNHPR  120
DRHDAGQIPL NILGLPMRQE EKPCPYYMRT GNCKFGIACK FNHPQPAAAL GAVLPVTGPT  180
AYGSAGSSVT PPSGLPYAGG LPTWSLPRGP SISGQSMQGG PQAYMPVVLS SSQGLLPTQP  240
GWSTYMGTMT PVSSTNVLGS HLVYASKQGE SGPNGQVHSS SFTQYPERPE QPECQYYMKT  300
GRCKFGPSCK YHHPRDKIAP LATNSMSPYG LPLRPGQAVC TYYSLYGICK YGAACKFDHP  360
MAGFYNCGGS MPSLSIPDSS IIPYQRNSLP SQSPETSPSK SSRLPDQTEE SNGKQQDQNI  420
KPPEDPKQDS LSSTNPKSSS LEPLNDLSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	5e-95	C3H family protein