PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026407443.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 459aa MW: 51664.9 Da PI: 7.0031

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026407443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.1e-12	95	119	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++rtG C+yG +C+F+H+ XP_026407443.1 95 DEPDCSFYLRTGACRYGLNCRFNHP 119 6899********************8 PP
2	zf-CCCH	35.8	1.3e-11	154	180	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG C++ H++ XP_026407443.1 154 PGEPECKYYLKTGACKYGKDCRYDHPR 180 5799*********************96 PP
3	zf-CCCH	26.8	8.8e-09	201	225	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++r G Ck+ +C+F+H+ XP_026407443.1 201 GEKECPFYMRVGSCKFATNCRFHHP 225 7899********************9 PP
4	zf-CCCH	33.2	9.1e-11	343	369	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+r+G Cky + C+F H++ XP_026407443.1 343 PGERECQYFMRNGDCKYRSACRFDHPK 369 5789*********************96 PP
5	zf-CCCH	32.2	1.8e-10	387	412	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e+C++++ +G+Ck+G+ CkF H+ XP_026407443.1 387 PGEEICSHYSHYGICKFGPACKFDHP 412 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MGEEEDYEKI NSSSSKSQEQ EEIKIESSSP SHSSVAHHHE IHHDPAIIHA LEGDFHNLRL 60 QQHQQHEEIN GVNYHKDAIY SNKNGSFLLY PLRPDEPDCS FYLRTGACRY GLNCRFNHPH 120 NRNKEHVRFQ QTHFPESLKV VKEKDNKEEY PERPGEPECK YYLKTGACKY GKDCRYDHPR 180 EKTAVGPAQH FNFLGLPIRP GEKECPFYMR VGSCKFATNC RFHHPDPGEA VGLDPSSGYH 240 SGMSVPLQSG GTSQSSASWS SPRTSNDPVP YASRSYSGLT ASPSQGTQQN LEWDGYQGPV 300 YPPKGNTNSA SAPFKSNFIR KTDGSKHYRH QQQMATDEFP ERPGERECQY FMRNGDCKYR 360 SACRFDHPKN RLQNSPALSP MGLPLRPGEE ICSHYSHYGI CKFGPACKFD HPLNYDGSSA 420 AAPTMSTSDQ LTHFVDAASS GSSRMTGYEN GDEAVIQSL

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MGEEEDYEKI NSSSSKSQEQ EEIKIESSSP SHSSVAHHHE IHHDPAIIHA LEGDFHNLRL  60
QQHQQHEEIN GVNYHKDAIY SNKNGSFLLY PLRPDEPDCS FYLRTGACRY GLNCRFNHPH  120
NRNKEHVRFQ QTHFPESLKV VKEKDNKEEY PERPGEPECK YYLKTGACKY GKDCRYDHPR  180
EKTAVGPAQH FNFLGLPIRP GEKECPFYMR VGSCKFATNC RFHHPDPGEA VGLDPSSGYH  240
SGMSVPLQSG GTSQSSASWS SPRTSNDPVP YASRSYSGLT ASPSQGTQQN LEWDGYQGPV  300
YPPKGNTNSA SAPFKSNFIR KTDGSKHYRH QQQMATDEFP ERPGERECQY FMRNGDCKYR  360
SACRFDHPKN RLQNSPALSP MGLPLRPGEE ICSHYSHYGI CKFGPACKFD HPLNYDGSSA  420
AAPTMSTSDQ LTHFVDAASS GSSRMTGYEN GDEAVIQSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	2e-86	C3H family protein