PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026407297.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

GATA

Protein Properties

Length: 549aa MW: 61265.7 Da PI: 7.2568

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026407297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.4	1.5e-16	10	44	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_026407297.1 10 CFHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 44 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MRNMGKHGPC FHCGVTSTPL WRNGPPEKPV LCNACGSRWR TKGSLTNYTP LHARAETDDF 60 EEYKAPKVKN LVIKAKGSKM YKRKHDHDSF VVKMEDPDYE ISYRRGTDED TSNRSSSGSA 120 ISYSESCAQF GTTEASEWTG SAQSIVWDTL VPSKKRTCVR RPKASSVEKL TKDLYSILQE 180 QQQSSYFSGS SEEDLLFESE TPIGSVEIGH GSILIKHPNA AVRDEESEAS SFSIDKSNTV 240 NEVYSGSTSL PVQTSYKGFN CPSVGSDNKI RRPFVAGIQS DCTKSDKSHK EDSPILQHHR 300 SPLRSVDLKD VVSFEEFVRH FTLEEQQLLM KHLPSWDTAR LPDSLRSMFS SVQFAEDLSS 360 FQKLLAEGVF DLTFSGMSTE ECKMLKKLAL VNPTKSKWVE HYNMLKDVKG KQITGGKGVS 420 HGSSVLGAQN FLSSKRPRDS KNQNFPEMKA MMKSPNRSVM KSSHEMKDPV EYDGSCFSPR 480 SLFGFTPERS SLMLDCFHFA DDSSEQDLLF DVPTNGSFPQ AELLHPSTSF ISQQASTSSS 540 VICSHLTNL

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MRNMGKHGPC FHCGVTSTPL WRNGPPEKPV LCNACGSRWR TKGSLTNYTP LHARAETDDF  60
EEYKAPKVKN LVIKAKGSKM YKRKHDHDSF VVKMEDPDYE ISYRRGTDED TSNRSSSGSA  120
ISYSESCAQF GTTEASEWTG SAQSIVWDTL VPSKKRTCVR RPKASSVEKL TKDLYSILQE  180
QQQSSYFSGS SEEDLLFESE TPIGSVEIGH GSILIKHPNA AVRDEESEAS SFSIDKSNTV  240
NEVYSGSTSL PVQTSYKGFN CPSVGSDNKI RRPFVAGIQS DCTKSDKSHK EDSPILQHHR  300
SPLRSVDLKD VVSFEEFVRH FTLEEQQLLM KHLPSWDTAR LPDSLRSMFS SVQFAEDLSS  360
FQKLLAEGVF DLTFSGMSTE ECKMLKKLAL VNPTKSKWVE HYNMLKDVKG KQITGGKGVS  420
HGSSVLGAQN FLSSKRPRDS KNQNFPEMKA MMKSPNRSVM KSSHEMKDPV EYDGSCFSPR  480
SLFGFTPERS SLMLDCFHFA DDSSEQDLLF DVPTNGSFPQ AELLHPSTSF ISQQASTSSS  540
VICSHLTNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-135	GATA family protein