PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026406670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family LSD
Protein Properties Length: 145aa    MW: 15201.8 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026406670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132852125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  XP_026406670.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                    ************************9 PP

2zf-LSD144.13.3e-146791125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C gC+tlL+Y rGA+sV+C++C+t+
  XP_026406670.1 67 CAGCHTLLMYIRGATSVQCSCCHTI 91
                    ***********************97 PP

3zf-LSD139.97.1e-13105129125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+C++C++V
  XP_026406670.1 105 CGNCRMLLMYQYGARSVKCTVCNFV 129
                     ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MPVPLAPYPT PPAPFTVPPN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTPVPPPGT  60
EMAQLVCAGC HTLLMYIRGA TSVQCSCCHT INLAMEANQV AHVNCGNCRM LLMYQYGARS  120
VKCTVCNFVT SVGASPSTVE QKFST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-78LSD family protein