PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026405793.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 686aa MW: 77163.9 Da PI: 7.1782

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026405793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	166	185	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cgk+F+++ +L H+r XP_026405793.1 166 TCRVCGKTFPSRKSLFGHMR 185 6******************8 PP
2	zf-C2H2	11.3	0.0011	484	506	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+ksF+++ L H +tH XP_026405793.1 484 FNCTSCNKSFPSHQALGGHRSTH 506 78*****************9999 PP
3	zf-C2H2	13	0.00031	595	617	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+F++ L H r H XP_026405793.1 595 HRCSICGKTFPTGQALGGHKRHH 617 79*************99999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MEDDQEKQFE LLKNHHLHHG DHFLNESSLP PMKNSRMLKM KLKCNSNVSN KEYGDEEKET 60 RVSDVCGKNV SSRKALGIHM RLHDLGYFNK HEEYEEEDYY DNKDNDDVTW QRIKNENKCS 120 STELMMGKNH KHHQQIFIDV SAATSAAAAV VNSNYINLSS HNNDNTCRVC GKTFPSRKSL 180 FGHMRCHPER EWRGIEPPTA AMIAKDKNYS NSSSSISSDT REGQKVDNPM MIDSARENTP 240 AKRKMKPSAP TTNRCSSPYS DLVDIDLPKW SVTAKRGRRS LTDSGELNNN EKNIAVDYSD 300 EEDQENVDDE CTLPTDPGAC HLMMLVMAAA QSESTPMDPS ALQSTIKQRR NDKSQQDDDY 360 SNNHSCSEVD KESSECKGVS DHQEILNGKK RMKTGNYPKG GLSLKKKKKK RLKVHNKESE 420 IGYIYDRTSK VIVEDSDAEF GDEYTKLSEM MMRKKRKTMK LKDLARVVDD VRKQEMEFSI 480 AERFNCTSCN KSFPSHQALG GHRSTHKSNK INQPKYKSNI EELTAGGLVI RRESDEDEED 540 GHNFYGLVNN ESANIKQTLE DFSFEVKSVE SISKSKSKLM AAAMTSSSNI SMQTHRCSIC 600 GKTFPTGQAL GGHKRHHGTS PSPSPSPSSV VDRIPPPLSS SSSVGSAEVF SSTNTTITTN 660 SFTTAATRGH RVVFDFDLNE LPVMEE

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MEDDQEKQFE LLKNHHLHHG DHFLNESSLP PMKNSRMLKM KLKCNSNVSN KEYGDEEKET  60
RVSDVCGKNV SSRKALGIHM RLHDLGYFNK HEEYEEEDYY DNKDNDDVTW QRIKNENKCS  120
STELMMGKNH KHHQQIFIDV SAATSAAAAV VNSNYINLSS HNNDNTCRVC GKTFPSRKSL  180
FGHMRCHPER EWRGIEPPTA AMIAKDKNYS NSSSSISSDT REGQKVDNPM MIDSARENTP  240
AKRKMKPSAP TTNRCSSPYS DLVDIDLPKW SVTAKRGRRS LTDSGELNNN EKNIAVDYSD  300
EEDQENVDDE CTLPTDPGAC HLMMLVMAAA QSESTPMDPS ALQSTIKQRR NDKSQQDDDY  360
SNNHSCSEVD KESSECKGVS DHQEILNGKK RMKTGNYPKG GLSLKKKKKK RLKVHNKESE  420
IGYIYDRTSK VIVEDSDAEF GDEYTKLSEM MMRKKRKTMK LKDLARVVDD VRKQEMEFSI  480
AERFNCTSCN KSFPSHQALG GHRSTHKSNK INQPKYKSNI EELTAGGLVI RRESDEDEED  540
GHNFYGLVNN ESANIKQTLE DFSFEVKSVE SISKSKSKLM AAAMTSSSNI SMQTHRCSIC  600
GKTFPTGQAL GGHKRHHGTS PSPSPSPSSV VDRIPPPLSS SSSVGSAEVF SSTNTTITTN  660
SFTTAATRGH RVVFDFDLNE LPVMEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	411	KKRMKTGNYPKGGLSLKKKKKKR
2	404	412	LKKKKKKRL
3	405	411	KKKKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-12	C2H2 family protein