PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026402770.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 732aa MW: 83011.5 Da PI: 5.2617

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026402770.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	127	146	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C +f++ G+C GdrC F H XP_026402770.1 127 PCYYFQK-GHCLKGDRCAFLH 146 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MNSGTQDSSN PQTTTAEDET SKRNTDCVYF LASPLTCKKG SECEFRHSEE ARMNPRDCWY 60 WMNSNCLNPK CPFRHPPLDG LLGTATTTST RSSMPPSLAA APMQIPTAYN PVTNAGKQMN 120 PHTQATPCYY FQKGHCLKGD RCAFLHEVFV DNSTLQPPAT KVTNSVSEPQ IPKRVGAGLQ 180 RCSTQQQKTQ QGNFGKPVEL KLVAKPSENN DFAQIKYGTD VKRSVPQVVN SFREELPRYK 240 PPNSRTVTSA DPVSRTHRSR QAYPMDYPTF QNGKEPDEFL SESSPGFDVL VDDELRDSDY 300 YRNEDDFGRM ASHDGRRVSS VNELDHRRSS DYSSVSKFDQ ETYNGSRGFD SYGRVQDQFL 360 QEKRRPSSER VTERPVLLER RGSSRARSPN QIDRSDLRYH LAKQRKVDGS RSAVSPDRRG 420 EFYKRDDRER DRDLSFGDER SRDHSRRNPR ESSVISNRLQ GRIQIPGRSP PDNRYNDSHQ 480 EREMDSERHG GRLSPPSRLL TSSIPGRLQD RIKQRTLNSF TADDRSFRTP PVRRDEADNG 540 TLNFAGPKRL AELKGPKVSD ENHWKNKETR KLVSYHEADG ALSFDGPKPL DVILKRKREE 600 GNSGSGDDPV SANEEESRTR RGMPSREEDV DEEEEGLISA EGDDAAAHEA HSSEPKGVEL 660 QDVEHEMVND KLDDQEFESY DQRDAESDYE PVDGGVDFKT EEDDINAEAE AEEDFSDDDG 720 DDFAKRIGVM FS

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MNSGTQDSSN PQTTTAEDET SKRNTDCVYF LASPLTCKKG SECEFRHSEE ARMNPRDCWY  60
WMNSNCLNPK CPFRHPPLDG LLGTATTTST RSSMPPSLAA APMQIPTAYN PVTNAGKQMN  120
PHTQATPCYY FQKGHCLKGD RCAFLHEVFV DNSTLQPPAT KVTNSVSEPQ IPKRVGAGLQ  180
RCSTQQQKTQ QGNFGKPVEL KLVAKPSENN DFAQIKYGTD VKRSVPQVVN SFREELPRYK  240
PPNSRTVTSA DPVSRTHRSR QAYPMDYPTF QNGKEPDEFL SESSPGFDVL VDDELRDSDY  300
YRNEDDFGRM ASHDGRRVSS VNELDHRRSS DYSSVSKFDQ ETYNGSRGFD SYGRVQDQFL  360
QEKRRPSSER VTERPVLLER RGSSRARSPN QIDRSDLRYH LAKQRKVDGS RSAVSPDRRG  420
EFYKRDDRER DRDLSFGDER SRDHSRRNPR ESSVISNRLQ GRIQIPGRSP PDNRYNDSHQ  480
EREMDSERHG GRLSPPSRLL TSSIPGRLQD RIKQRTLNSF TADDRSFRTP PVRRDEADNG  540
TLNFAGPKRL AELKGPKVSD ENHWKNKETR KLVSYHEADG ALSFDGPKPL DVILKRKREE  600
GNSGSGDDPV SANEEESRTR RGMPSREEDV DEEEEGLISA EGDDAAAHEA HSSEPKGVEL  660
QDVEHEMVND KLDDQEFESY DQRDAESDYE PVDGGVDFKT EEDDINAEAE AEEDFSDDDG  720
DDFAKRIGVM FS