PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026402520.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

RAV

Protein Properties

Length: 387aa MW: 43206.7 Da PI: 8.7746

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026402520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.7	1.4e-13	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a ++++g XP_026402520.1 65 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKAYDIAVQRFRG 113 78**9888.8*****3.....5**********************998 PP
2	B3	95.6	3.4e-30	200	299	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gLk+g +v F+++ +++ XP_026402520.1 200 FEKAVTPSDVGKLNRLVIPKQHAEKYfpleiGTI-SKGVLLNFEDNEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGCVVSFQRSTGQDK 293 89*************************96444.5889***********************************************8766777 PP ..EEEE CS B3 91 elvvkv 96 +l++ + XP_026402520.1 294 QLYIDW 299 777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MENSCCIDEG TSTTDSVSLS PNTTKLDSSS DKNSSTKLCR MGSGTSVVVD SESGAEAESR 60 KLPSSQYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AKAYDIAVQR FRGRDAVTNF 120 KMNVLEEDNI EYIFLNSRSK AEIVDMLRKH TYSDELEHGK RNYTSTVSEN ASGRYLGSNG 180 TGLGLGLDPV ILMKARSHLF EKAVTPSDVG KLNRLVIPKQ HAEKYFPLEI GTISKGVLLN 240 FEDNEGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLKAG CVVSFQRSTG QDKQLYIDWK 300 PRINNVNPVP AEIMTGLAQE VLSVNNPVLQ GGQQVVRLFG VNIFKLPVVV MDSCNSSKRR 360 RENDQVDKSL SSSAEYHCKK QCVVGAL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MENSCCIDEG TSTTDSVSLS PNTTKLDSSS DKNSSTKLCR MGSGTSVVVD SESGAEAESR  60
KLPSSQYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AKAYDIAVQR FRGRDAVTNF  120
KMNVLEEDNI EYIFLNSRSK AEIVDMLRKH TYSDELEHGK RNYTSTVSEN ASGRYLGSNG  180
TGLGLGLDPV ILMKARSHLF EKAVTPSDVG KLNRLVIPKQ HAEKYFPLEI GTISKGVLLN  240
FEDNEGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLKAG CVVSFQRSTG QDKQLYIDWK  300
PRINNVNPVP AEIMTGLAQE VLSVNNPVLQ GGQQVVRLFG VNIFKLPVVV MDSCNSSKRR  360
RENDQVDKSL SSSAEYHCKK QCVVGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-135	RAV family protein