PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026401634.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 370aa MW: 40736 Da PI: 6.7732

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026401634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	5.2e-08	109	133	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaHg XP_026401634.1 109 FKTKLCCKFRT-GTCPYITNCNFAHG 133 69*******.***********8 PP
2	zf-CCCH	18.5	3.5e-06	183	208	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_026401634.1 183 YKGRHCKKFYTEEGCPYGDNCTFLHD 208 78888********************7 PP
3	zf-CCCH	44.1	3.3e-14	243	268	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_026401634.1 243 WKTRICNKWETTGYCPFGSKCHFAHG 268 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MDYGGEAGFS GGNVVQINPE IPSMENWGPS LNDQAIWATE DDYGLWNGDL SVDTPLNYDG 60 RQSQSRSGSE PPNKKSRNNS QGGDSFGSGF GRDFPSPANR SKVIGKMFFK TKLCCKFRTG 120 TCPYITNCNF AHGIEELRKP PPNWQEIVAA QDEDRWLLSE PREENQIPIL TTSNNTGETQ 180 RSYKGRHCKK FYTEEGCPYG DNCTFLHDEQ SKARESVAIS LGPSMGNGYG TTANGSSQKP 240 SNWKTRICNK WETTGYCPFG SKCHFAHGLG ELHRYGGGLV DTEGREGSLA PPDLKPVGGV 300 PSKTTMDSGL PSTTSVPHAD VYHMGGVPSQ RSLAVNQRPG QRPIHKWKGP DKISRIYGDW 360 IDDNEMEPAR

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MDYGGEAGFS GGNVVQINPE IPSMENWGPS LNDQAIWATE DDYGLWNGDL SVDTPLNYDG  60
RQSQSRSGSE PPNKKSRNNS QGGDSFGSGF GRDFPSPANR SKVIGKMFFK TKLCCKFRTG  120
TCPYITNCNF AHGIEELRKP PPNWQEIVAA QDEDRWLLSE PREENQIPIL TTSNNTGETQ  180
RSYKGRHCKK FYTEEGCPYG DNCTFLHDEQ SKARESVAIS LGPSMGNGYG TTANGSSQKP  240
SNWKTRICNK WETTGYCPFG SKCHFAHGLG ELHRYGGGLV DTEGREGSLA PPDLKPVGGV  300
PSKTTMDSGL PSTTSVPHAD VYHMGGVPSQ RSLAVNQRPG QRPIHKWKGP DKISRIYGDW  360
IDDNEMEPAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-119	C3H family protein