PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026401496.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

GATA

Protein Properties

Length: 546aa MW: 60832.3 Da PI: 7.1848

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026401496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.4	1.5e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_026401496.1 7 CFHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MGKHGPCFHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYTPLHA RAETDDFEEY 60 KAPKVKNLVI KARGSKMYKR KQDHDSFVVK MEDPDYEISY RRGTDEDTSN RSSSGSAISY 120 SESCAQFGTT EASEWTGSAQ SIVWDTLVPS KKRTCVRRPK PSSVEKLTKD LYSILQEQQQ 180 SSYFSGSSEE DLLFESETPI DSVEIGHGSI LIKHPNAAVR DEESEASSFS IDKSNTVNEV 240 YSGSTSLPVQ TSYKGFNCPS VGSDNKIRRP FIAGIQSDCT KSDKSHKEDS PILQHHRSPL 300 RSVDLKDVVS FEGFVRHFTL EEQQLLMKHL PSWDTARLPD SLRSMFSSVQ FAEDLSSFQK 360 LLAEGVFDLT FSGMSAEECK MLKKLALVNP TKSKWVEHYN MLKDVKGKQI TGGKGVLHGS 420 SVLGAQNLLS SKRPRDSKKQ NFPEMKAMMK SPNRLVMKSS HEAKDPVEYD GSCFSPRSLF 480 GFTPERSSLM LDCFDFADDS SEQDLLFDVP TNGSFPQAEL LHPSTSFISQ QASTSSSVIC 540 SRLTNP

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MGKHGPCFHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYTPLHA RAETDDFEEY  60
KAPKVKNLVI KARGSKMYKR KQDHDSFVVK MEDPDYEISY RRGTDEDTSN RSSSGSAISY  120
SESCAQFGTT EASEWTGSAQ SIVWDTLVPS KKRTCVRRPK PSSVEKLTKD LYSILQEQQQ  180
SSYFSGSSEE DLLFESETPI DSVEIGHGSI LIKHPNAAVR DEESEASSFS IDKSNTVNEV  240
YSGSTSLPVQ TSYKGFNCPS VGSDNKIRRP FIAGIQSDCT KSDKSHKEDS PILQHHRSPL  300
RSVDLKDVVS FEGFVRHFTL EEQQLLMKHL PSWDTARLPD SLRSMFSSVQ FAEDLSSFQK  360
LLAEGVFDLT FSGMSAEECK MLKKLALVNP TKSKWVEHYN MLKDVKGKQI TGGKGVLHGS  420
SVLGAQNLLS SKRPRDSKKQ NFPEMKAMMK SPNRLVMKSS HEAKDPVEYD GSCFSPRSLF  480
GFTPERSSLM LDCFDFADDS SEQDLLFDVP TNGSFPQAEL LHPSTSFISQ QASTSSSVIC  540
SRLTNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-135	GATA family protein