PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026400938.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

bHLH

Protein Properties

Length: 476aa MW: 53358.7 Da PI: 4.9972

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026400938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	263	314	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N + Lr+l+P + + ++ + a+i A+e++++L+ XP_026400938.1 263 QRMTHIAVERNRRKQMNGHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 314 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEREEDNYST SVAGLNGNNY AGIDYSLYQN HLHRHKQQQE NHHQTLMKQS SVRVDGENTG 60 EGKVVDYMFN NSNTNITQPL VPPPPQQISS GYSLDRLSFA EVMQFADFGP KLALNQKQMM 120 EPAAANANDG ISEVEDRAGK DMGLIDPVYF LKFPVLSERS FDQQTHDGGD DVQNNLLLAT 180 PPLPVRDDHV AHDLEEEDEE ARIIFSENSS LNDRLGFLEE NNTHNHENIM MNSSGTEMGG 240 VTTKLNRRKR PRSVKTSEEV ESQRMTHIAV ERNRRKQMNG HLRVLRSLMP GSYVQRGDQA 300 SIIGGAIEFV RELEQLLQCL ESQKRRRLYG DNATTLAPST TTAQQLPPPM FPQLPLSSND 360 QINKLATATI DVEQMGGGQL HEDTAENKSC LADVEVKLLG MDAMVKILSR RRPGQLLKTI 420 AALEDLELDI LHTNVTTIEQ TVLYSFNVKV VSETRFTAED IAGSIQQIFN FIHAST

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEREEDNYST SVAGLNGNNY AGIDYSLYQN HLHRHKQQQE NHHQTLMKQS SVRVDGENTG  60
EGKVVDYMFN NSNTNITQPL VPPPPQQISS GYSLDRLSFA EVMQFADFGP KLALNQKQMM  120
EPAAANANDG ISEVEDRAGK DMGLIDPVYF LKFPVLSERS FDQQTHDGGD DVQNNLLLAT  180
PPLPVRDDHV AHDLEEEDEE ARIIFSENSS LNDRLGFLEE NNTHNHENIM MNSSGTEMGG  240
VTTKLNRRKR PRSVKTSEEV ESQRMTHIAV ERNRRKQMNG HLRVLRSLMP GSYVQRGDQA  300
SIIGGAIEFV RELEQLLQCL ESQKRRRLYG DNATTLAPST TTAQQLPPPM FPQLPLSSND  360
QINKLATATI DVEQMGGGQL HEDTAENKSC LADVEVKLLG MDAMVKILSR RRPGQLLKTI  420
AALEDLELDI LHTNVTTIEQ TVLYSFNVKV VSETRFTAED IAGSIQQIFN FIHAST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	275	RMTHIAVERNRR
2	324	328	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-111	bHLH family protein