PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026399695.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 770aa MW: 84081.5 Da PI: 7.0366

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026399695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	470	490	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++ +G C++Gd+C F+H XP_026399695.1 470 PCNNYVSNGSCNRGDKCLFSH 490 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence
MEEAIHSGFL RRRPHLGSKT VDTLLKIMSL CADDQESQNS NPIVFDARNS GVRRNDSENE 60 LVKDKSTEVV LGVENLMILD DEVGSLVVKE PQQGNVDEAK VVDEHVRNEI LEPIRHPEDM 120 QVQSSSSEQN VGNEVAGDHQ REETCLTEPV NLNSAASLLT DMDIEDGEIP DGLGLYNELV 180 DLINEDLASN EEKTGGEDQI HLEVNKESNI EAQREEDRAA VEKYMSSACT QEEIKMKKNK 240 RKLDRDCAVG VGNRNLKRGY EDDLLPGAGN GGKEIDEANV DAPAKKPCLS DRILEQSYGD 300 DLLQEAGSSG RESSEAKVPA ITKEAGFCNR QLERGYDDDL LRDAGTSGKD NGEAEMAETT 360 KKNTKAGEKR SGVPSKERKA KKRMNERKKR AQTRREQGVK RLRIEPQISK PKPPKYCEFY 420 LKGRCQKGYS CKFSHDTTPL TKSQPCKFLP LQQCLKGDDC PFDHQLSKYP CNNYVSNGSC 480 NRGDKCLFSH KILETPKLSD VSPTEAVSQP SPNNLNTKRS QNTKNISPCI LNNISSGASL 540 KTPSTTGSHV HKNPEQSVLE KMRSPAQPPK GVTLLSFGNS PSNNSSVRPP AQPPKGVTLL 600 SFGNSPPNNS SMRPPAQPPK GVKLLSFGIS PLNNSSNKTN SNGTEASSQI DQETLKTAQS 660 SNQLFQKTTP STSASASQGS QNSSQNLQNK NPAQRAPSST LSFAAKYESE MMKNRSKIPT 720 GLSTTANSSK TPSSSTAASS SIDNIQNRLL KASPLLQEFL FGFGGTDGKL

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence

MEEAIHSGFL RRRPHLGSKT VDTLLKIMSL CADDQESQNS NPIVFDARNS GVRRNDSENE  60
LVKDKSTEVV LGVENLMILD DEVGSLVVKE PQQGNVDEAK VVDEHVRNEI LEPIRHPEDM  120
QVQSSSSEQN VGNEVAGDHQ REETCLTEPV NLNSAASLLT DMDIEDGEIP DGLGLYNELV  180
DLINEDLASN EEKTGGEDQI HLEVNKESNI EAQREEDRAA VEKYMSSACT QEEIKMKKNK  240
RKLDRDCAVG VGNRNLKRGY EDDLLPGAGN GGKEIDEANV DAPAKKPCLS DRILEQSYGD  300
DLLQEAGSSG RESSEAKVPA ITKEAGFCNR QLERGYDDDL LRDAGTSGKD NGEAEMAETT  360
KKNTKAGEKR SGVPSKERKA KKRMNERKKR AQTRREQGVK RLRIEPQISK PKPPKYCEFY  420
LKGRCQKGYS CKFSHDTTPL TKSQPCKFLP LQQCLKGDDC PFDHQLSKYP CNNYVSNGSC  480
NRGDKCLFSH KILETPKLSD VSPTEAVSQP SPNNLNTKRS QNTKNISPCI LNNISSGASL  540
KTPSTTGSHV HKNPEQSVLE KMRSPAQPPK GVTLLSFGNS PSNNSSVRPP AQPPKGVTLL  600
SFGNSPPNNS SMRPPAQPPK GVKLLSFGIS PLNNSSNKTN SNGTEASSQI DQETLKTAQS  660
SNQLFQKTTP STSASASQGS QNSSQNLQNK NPAQRAPSST LSFAAKYESE MMKNRSKIPT  720
GLSTTANSSK TPSSSTAASS SIDNIQNRLL KASPLLQEFL FGFGGTDGKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	9e-06	C3H family protein