PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_026398048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 204aa MW: 22787.8 Da PI: 9.731 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.7e-12 | 127 | 150 | 1 | 24 |
--S---SGGGGTS--TTTTT-SS- CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFa 24 yktelC+ + +tG C+yGd+C+Fa XP_026398048.1 127 YKTELCNKWVQTGVCRYGDQCQFA 150 9**********************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence |
MNAGTNTTAP PFNRITGRHR AAAVTSPTRV IGNINQGFEE NSVQFQPERA SLPKSISIRS 60 SSYFKMNAGR NTTAPSSNRI TTDGLRAAAT PFFPRTSLRV HMPTLSAVDE KKDPVPVELD 120 AYVQGMYKTE LCNKWVQTGV CRYGDQCQFA DGFGELRPVV RHPRYKTEVC REILNGGFCP 180 YDHRCHFRRV LTDQEKRAAG ITCS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66810.1 | 4e-41 | C3H family protein |