PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026398047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 351aa MW: 39738.7 Da PI: 7.805 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.1e-12 | 275 | 300 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + + G C+yG C+FaHg XP_026398047.1 275 PKTELCDKWVEDGVCPYGVYCQFAHG 300 7************************9 PP | |||||||
2 | zf-CCCH | 22.4 | 2.2e-07 | 313 | 337 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr + +G+C+yG rC+F H XP_026398047.1 313 YKTEACRMVLNGGFCPYGHRCHFRH 337 9**********************88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence |
MNPMPIRDQN EEESPNYKSS SSSSGSSRFS SENSSQFPPD SSTSDSFPLT LASYSSFNGK 60 IKMNRLTTED RVHLSHLNSH LNNLKDDFGL CSNHLEYSSR KIVVLRHKNA ALRLINNDLK 120 DRLIQLLQVY MDLQKIPLPD YVSSFINDHI SLSIGDIRGG STGYNRFVPS RETSVTSSGI 180 ADNGFEEKPI QFQSERVCLP KSISIRSNAY LKMSQSNNPY ASDTTAPPSS NKNVDRLTFV 240 PPRVKLPTVP AVDDEKKKEE VEVPLELDVY NQGMPKTELC DKWVEDGVCP YGVYCQFAHG 300 LKEMRPVIRH PRYKTEACRM VLNGGFCPYG HRCHFRHALT DQEMRTGFTH Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-44 | C3H family protein |