PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026398047.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 351aa MW: 39738.7 Da PI: 7.805

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026398047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.1e-12	275	300	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + + G C+yG C+FaHg XP_026398047.1 275 PKTELCDKWVEDGVCPYGVYCQFAHG 300 7************************9 PP
2	zf-CCCH	22.4	2.2e-07	313	337	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr + +G+C+yG rC+F H XP_026398047.1 313 YKTEACRMVLNGGFCPYGHRCHFRH 337 9**********************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MNPMPIRDQN EEESPNYKSS SSSSGSSRFS SENSSQFPPD SSTSDSFPLT LASYSSFNGK 60 IKMNRLTTED RVHLSHLNSH LNNLKDDFGL CSNHLEYSSR KIVVLRHKNA ALRLINNDLK 120 DRLIQLLQVY MDLQKIPLPD YVSSFINDHI SLSIGDIRGG STGYNRFVPS RETSVTSSGI 180 ADNGFEEKPI QFQSERVCLP KSISIRSNAY LKMSQSNNPY ASDTTAPPSS NKNVDRLTFV 240 PPRVKLPTVP AVDDEKKKEE VEVPLELDVY NQGMPKTELC DKWVEDGVCP YGVYCQFAHG 300 LKEMRPVIRH PRYKTEACRM VLNGGFCPYG HRCHFRHALT DQEMRTGFTH Y

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MNPMPIRDQN EEESPNYKSS SSSSGSSRFS SENSSQFPPD SSTSDSFPLT LASYSSFNGK  60
IKMNRLTTED RVHLSHLNSH LNNLKDDFGL CSNHLEYSSR KIVVLRHKNA ALRLINNDLK  120
DRLIQLLQVY MDLQKIPLPD YVSSFINDHI SLSIGDIRGG STGYNRFVPS RETSVTSSGI  180
ADNGFEEKPI QFQSERVCLP KSISIRSNAY LKMSQSNNPY ASDTTAPPSS NKNVDRLTFV  240
PPRVKLPTVP AVDDEKKKEE VEVPLELDVY NQGMPKTELC DKWVEDGVCP YGVYCQFAHG  300
LKEMRPVIRH PRYKTEACRM VLNGGFCPYG HRCHFRHALT DQEMRTGFTH Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-44	C3H family protein