PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026397311.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 366aa MW: 41393.5 Da PI: 6.9294

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026397311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00096	6	26	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C k+Fs+ L H+++H XP_026397311.1 6 CKICFKRFSNGRALGGHMKSH 26 *******************99 PP
2	zf-C2H2	12.2	0.00057	242	264	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_026397311.1 242 YQCESCKKVFRSYQALGGHRANH 264 9***********99999998887 PP
3	zf-C2H2	15.1	6.5e-05	289	310	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kCp C ksF+++ L H r H XP_026397311.1 289 KCPVCFKSFKSRQALGGHKRIH 310 8******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MEKRNCKICF KRFSNGRALG GHMKSHMAIL QTPPKVEQTK FNLQQEQIRN EAASSEEEGD 60 EEEMKNGLYY GLREHPKKSF RLVDPIFSSS TATMEVGNSS SVIIDRESET DESFKNNTPP 120 LTRRRSKRNR RIPITQKDQY LTYNEEIHCN IKKMKKLKKA IMKAEAFEPV ESEPVSSVSD 180 NTIEEDVAFS LMMLSRDTWI KESDEVSEKS IEIEDDYDSE EEIIKLTSYT SRTAATPTRK 240 KYQCESCKKV FRSYQALGGH RANHSKINGC ILPSSTIQAD QSNADDYLKC PVCFKSFKSR 300 QALGGHKRIH FSADLAAAAA ANSNTTTSTT PVSAASKSIK FRDNLIDLNL PAPIEEDDNS 360 EFIDLI

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MEKRNCKICF KRFSNGRALG GHMKSHMAIL QTPPKVEQTK FNLQQEQIRN EAASSEEEGD  60
EEEMKNGLYY GLREHPKKSF RLVDPIFSSS TATMEVGNSS SVIIDRESET DESFKNNTPP  120
LTRRRSKRNR RIPITQKDQY LTYNEEIHCN IKKMKKLKKA IMKAEAFEPV ESEPVSSVSD  180
NTIEEDVAFS LMMLSRDTWI KESDEVSEKS IEIEDDYDSE EEIIKLTSYT SRTAATPTRK  240
KYQCESCKKV FRSYQALGGH RANHSKINGC ILPSSTIQAD QSNADDYLKC PVCFKSFKSR  300
QALGGHKRIH FSADLAAAAA ANSNTTTSTT PVSAASKSIK FRDNLIDLNL PAPIEEDDNS  360
EFIDLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	159	RRSKRNRRIPITQKDQYLTYNEEIHCNIKKMKKLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-28	C2H2 family protein