PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026397095.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 316aa    MW: 36455.2 Da    PI: 8.8247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026397095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.21.6e-11345244
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     i+n  +r+ t+ kRr g+ KK  E  +LCd+ +++i++++++
  XP_026397095.1  3 LISNLKKRKETYQKRRIGLKKKLVEFTILCDVPACMILYGPSQ 45
                    699*************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MKLISNLKKR KETYQKRRIG LKKKLVEFTI LCDVPACMIL YGPSQGNRPV EVETWPPELD  60
KVNGIIERYR QVPEEDKQKR RQDLYDFFQE RKKKTEADLG KLRKEHDEFQ YFDDQFKGLA  120
VEQLQQVLQR LGSKMESVDE RIEQKKNQDM KGMTNQSNVA PYSMPNTSFE GNMFRNNSQQ  180
QLDGSLYRPL FGGQGVLTES SQPKTNDYQP YDMFNTAYPY GNISYDPPML SRGNMEFGNP  240
GSSTFSMMPT PTLMPIPWSG SMPSAGYPSQ AHYYQSPMQH GSSSSHEPQH SFTINSFPMS  300
SGPALRQMNY PPERIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681DKQKRR
27994KRRQDLYDFFQERKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37415.11e-16M-type_MADS family protein