PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026396560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26269.7 Da PI: 9.2736 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73 | 2.4e-23 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie + rqvtfskRr g++KKA+ELS+LC+ae+a+i+fs+ gk + + XP_026396560.1 17 KRIEKEDARQVTFSKRRGGVFKKAHELSTLCGAEIAIIVFSPAGKPFSF 65 79******************************************96655 PP | |||||||
2 | K-box | 13.5 | 3.1e-06 | 119 | 172 | 22 | 75 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 ++ + + ++++++++ ++ +++L + eL+qL ++++ +k+ ++ +elll+ XP_026396560.1 119 KRGAELKKLMKENKKQFWWDPIDDLGVHELEQLSAAIDDLKNKVADRADELLLT 172 4444445567799*************************9999999999998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MAVTRKPSMG RQKIEIKRIE KEDARQVTFS KRRGGVFKKA HELSTLCGAE IAIIVFSPAG 60 KPFSFTHPQN IIDRYLSGNS HQADNMSPTP LVTAHREAKI RELNREYTEA LTRLEAEKKR 120 GAELKKLMKE NKKQFWWDPI DDLGVHELEQ LSAAIDDLKN KVADRADELL LTSYLPGENP 180 GMSSSGTSHS ESSSTITFET KPTIIPNHQQ IHTSSLPHHG YGADFGLYGR NGLY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-41 | M-type_MADS family protein |