PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026395616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | LSD | ||||||||
Protein Properties | Length: 186aa MW: 19459.5 Da PI: 8.5501 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39 | 1.3e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA +V+Ca+C+t+ XP_026395616.1 7 CSGCRSVLLYPRGAANVCCAICNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 46.6 | 5.5e-15 | 48 | 72 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+t+ XP_026395616.1 48 CGGCRTLLMYARGATSVRCSCCHTI 72 ***********************97 PP | |||||||
3 | zf-LSD1 | 43.2 | 6.6e-14 | 92 | 116 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C+++L+YP+GApsV+Ca+C+ V XP_026395616.1 92 CGRCHITLMYPYGAPSVKCAVCQYV 116 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MQSQLVCSGC RSVLLYPRGA ANVCCAICNT ITAPTVPPPG MDMSQLTCGG CRTLLMYARG 60 ATSVRCSCCH TINLARPPAP APAPNPVAHV NCGRCHITLM YPYGAPSVKC AVCQYVTSTG 120 MSAPTPNSNG QVNRPNWSST TPTPMPSTSA AMRTHSQTVV VENPMSVDES GKLVTNVVVG 180 VTSEKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-59 | LSD family protein |