PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395401.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 723aa MW: 78580.8 Da PI: 6.5066

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_026395401.1 305 PCPDFRK-GACRRGDLCEYAHG 325 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MCVGPEPTQS NSSSSSSATA SEETKSPTRS MNQLTTETED SSLLELAANN DLDEFKQLVE 60 RDASAVNQIG LWYGRKKGSK QMVLEHRTPL MVAATYGSVD VLKFILSLTE ADVNRSCGPD 120 KSTALHCAAS GGSVNADEVV NLLLLSGADA SLVDANGCRA ADVIVVSSKL PNLKASLETL 180 LADIGSEVSA TGRNLQISTT CIRSNPSSPE NGSPSSVSDL LSSLTMNVDD LHMSANSEKK 240 EYPVDPSLPD IRNSIYSSDE FRMFSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCTRR VCFFAHISEE 360 LRPLYMSSGS VVPSPRSSAV AMDMAAAMNL YPASPSSASV MSPSPFASHM SPSGNSISHS 420 SLAWPQPNVP ALHLPGSNLQ SSRLRSSLNA RDIPSEEYSM LQEQHQLLSE LSCFSQQQRL 480 SSSSLNIPIR TKTLTPSNLE ELFSAEITRS PRYADQAASS SVFSPSHKSA VLSQFQQQQS 540 MLSPINTNAF SPKNVDYSML QASYGSPGRM SPHNMEPISP GSARLSVFSQ REKLQQQQQQ 600 LRSLSARDLG SNSSAVVGSP VKSWTKWGSP NGKLDWGVQG DELGHLRRSN SLEPGHNGVE 660 ERDLSWVHSL VKESPPEIKG KVIPSSPPAP SGEGSNSNLQ NESVDNTVLG AWLEQMQLDQ 720 LVA

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MCVGPEPTQS NSSSSSSATA SEETKSPTRS MNQLTTETED SSLLELAANN DLDEFKQLVE  60
RDASAVNQIG LWYGRKKGSK QMVLEHRTPL MVAATYGSVD VLKFILSLTE ADVNRSCGPD  120
KSTALHCAAS GGSVNADEVV NLLLLSGADA SLVDANGCRA ADVIVVSSKL PNLKASLETL  180
LADIGSEVSA TGRNLQISTT CIRSNPSSPE NGSPSSVSDL LSSLTMNVDD LHMSANSEKK  240
EYPVDPSLPD IRNSIYSSDE FRMFSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCTRR VCFFAHISEE  360
LRPLYMSSGS VVPSPRSSAV AMDMAAAMNL YPASPSSASV MSPSPFASHM SPSGNSISHS  420
SLAWPQPNVP ALHLPGSNLQ SSRLRSSLNA RDIPSEEYSM LQEQHQLLSE LSCFSQQQRL  480
SSSSLNIPIR TKTLTPSNLE ELFSAEITRS PRYADQAASS SVFSPSHKSA VLSQFQQQQS  540
MLSPINTNAF SPKNVDYSML QASYGSPGRM SPHNMEPISP GSARLSVFSQ REKLQQQQQQ  600
LRSLSARDLG SNSSAVVGSP VKSWTKWGSP NGKLDWGVQG DELGHLRRSN SLEPGHNGVE  660
ERDLSWVHSL VKESPPEIKG KVIPSSPPAP SGEGSNSNLQ NESVDNTVLG AWLEQMQLDQ  720
LVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	81	GRKKGSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein