PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395060.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 418aa MW: 44588.5 Da PI: 8.3383

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.2	1.3e-08	52	78	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026395060.1 52 PGEPACPYFLKTKKCRFGFKCKFNHPK 78 57899********************96 PP
2	zf-CCCH	41	3.1e-13	102	125	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tG+Ck+G++CkF+H++ XP_026395060.1 102 PPCSFYMKTGICKFGESCKFHHPK 125 89********************96 PP
3	zf-CCCH	38.7	1.6e-12	176	202	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026395060.1 176 PGEVDCPFYLKTGSCKYGATCRYSHPE 202 57899********************96 PP
4	zf-CCCH	38.2	2.4e-12	262	286	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C f+++tG Ck+G+rCk++H+ XP_026395060.1 262 GQTECEFYMKTGDCKFGERCKYHHP 286 6789********************8 PP
5	zf-CCCH	41.8	1.8e-13	315	338	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026395060.1 315 VVCPFYMKTGACKYGSSCRFDHPP 338 67********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MTDIGFLQFH NSPYGHLVLT RLLLSALVLL VLSVLLPKVP LVPLGDTLPE RPGEPACPYF 60 LKTKKCRFGF KCKFNHPKDI TKSVDASKIV DLSLLPERPY APPCSFYMKT GICKFGESCK 120 FHHPKDIQIP VTGQENGCAE HDASVGSFDS IMSVKPPFVP FTPASLHNTK GLPVRPGEVD 180 CPFYLKTGSC KYGATCRYSH PERAVISISV APGLGHAMMT SSASSMNVGL INPAAMVLPT 240 IDPRLGQATL GLGVAVYPQR PGQTECEFYM KTGDCKFGER CKYHHPIDRT AATQSMPKQD 300 VKLTLAGLPR REGAVVCPFY MKTGACKYGS SCRFDHPPPG EAVAMATVVQ GSSSAPLSGK 360 AVAMATTVQG SSSAPPLGEA VAMPTVTQGS SFAAEDGESN NNNNTIVPEV AISFGSTS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MTDIGFLQFH NSPYGHLVLT RLLLSALVLL VLSVLLPKVP LVPLGDTLPE RPGEPACPYF  60
LKTKKCRFGF KCKFNHPKDI TKSVDASKIV DLSLLPERPY APPCSFYMKT GICKFGESCK  120
FHHPKDIQIP VTGQENGCAE HDASVGSFDS IMSVKPPFVP FTPASLHNTK GLPVRPGEVD  180
CPFYLKTGSC KYGATCRYSH PERAVISISV APGLGHAMMT SSASSMNVGL INPAAMVLPT  240
IDPRLGQATL GLGVAVYPQR PGQTECEFYM KTGDCKFGER CKYHHPIDRT AATQSMPKQD  300
VKLTLAGLPR REGAVVCPFY MKTGACKYGS SCRFDHPPPG EAVAMATVVQ GSSSAPLSGK  360
AVAMATTVQG SSSAPPLGEA VAMPTVTQGS SFAAEDGESN NNNNTIVPEV AISFGSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-125	C3H family protein