PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026395059.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 489aa    MW: 53009.4 Da    PI: 8.2373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026395059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-1090114226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C +++ t tC++Gd+CkF H+
  XP_026395059.1  90 GETDCAHYMLTRTCRFGDTCKFDHP 114
                     6789********************8 PP

2zf-CCCH261.6e-08141167127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f++t  C++G +CkF+H++
  XP_026395059.1 141 PGEPACPYFLKTKKCRFGFKCKFNHPK 167
                     57899********************96 PP

3zf-CCCH40.83.8e-13191214427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+f+++tG+Ck+G++CkF+H++
  XP_026395059.1 191 PPCSFYMKTGICKFGESCKFHHPK 214
                     89********************96 PP

4zf-CCCH38.52e-12265291127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+f+++tG CkyG++C+++H++
  XP_026395059.1 265 PGEVDCPFYLKTGSCKYGATCRYSHPE 291
                     57899********************96 PP

5zf-CCCH31.62.8e-10339357826
                     GGGGTS--TTTTT-SS-SS CS
         zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                     f+++tG Ck+G+rCk++H+
  XP_026395059.1 339 FYMKTGDCKFGERCKYHHP 357
                     9*****************8 PP

6zf-CCCH41.52.2e-13386409427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C+f+++tG CkyG++C+F H+p
  XP_026395059.1 386 VVCPFYMKTGACKYGSSCRFDHPP 409
                     67********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSPCFAGTKR TSSEALYHQT YLGTSNTFGQ  60
SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCAHYMLT RTCRFGDTCK FDHPIWVPEG  120
GIPDWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIT KSVDASKIVD  180
LSLLPERPYA PPCSFYMKTG ICKFGESCKF HHPKDIQIPV TGQENGCAEH DASVGSFDSI  240
MSVKPPFVPF TPASLHNTKG LPVRPGEVDC PFYLKTGSCK YGATCRYSHP ERAVISISVA  300
PGLGHAMMTS SASSMNVGLI NPAAMVLPTI DPRLGQATFY MKTGDCKFGE RCKYHHPIDR  360
TAATQSMPKQ DVKLTLAGLP RREGAVVCPF YMKTGACKYG SSCRFDHPPP GEAVAMATVV  420
QGSSSAPLSG KAVAMATTVQ GSSSAPPLGE AVAMPTVTQG SSFAAEDGES NNNNNTIVPE  480
VAISFGSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-173C3H family protein