PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026395059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 489aa MW: 53009.4 Da PI: 8.2373 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.9 | 2.2e-10 | 90 | 114 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C +++ t tC++Gd+CkF H+ XP_026395059.1 90 GETDCAHYMLTRTCRFGDTCKFDHP 114 6789********************8 PP | |||||||
2 | zf-CCCH | 26 | 1.6e-08 | 141 | 167 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026395059.1 141 PGEPACPYFLKTKKCRFGFKCKFNHPK 167 57899********************96 PP | |||||||
3 | zf-CCCH | 40.8 | 3.8e-13 | 191 | 214 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tG+Ck+G++CkF+H++ XP_026395059.1 191 PPCSFYMKTGICKFGESCKFHHPK 214 89********************96 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 265 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026395059.1 265 PGEVDCPFYLKTGSCKYGATCRYSHPE 291 57899********************96 PP | |||||||
5 | zf-CCCH | 31.6 | 2.8e-10 | 339 | 357 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f+++tG Ck+G+rCk++H+ XP_026395059.1 339 FYMKTGDCKFGERCKYHHP 357 9*****************8 PP | |||||||
6 | zf-CCCH | 41.5 | 2.2e-13 | 386 | 409 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026395059.1 386 VVCPFYMKTGACKYGSSCRFDHPP 409 67********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence |
MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSPCFAGTKR TSSEALYHQT YLGTSNTFGQ 60 SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCAHYMLT RTCRFGDTCK FDHPIWVPEG 120 GIPDWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIT KSVDASKIVD 180 LSLLPERPYA PPCSFYMKTG ICKFGESCKF HHPKDIQIPV TGQENGCAEH DASVGSFDSI 240 MSVKPPFVPF TPASLHNTKG LPVRPGEVDC PFYLKTGSCK YGATCRYSHP ERAVISISVA 300 PGLGHAMMTS SASSMNVGLI NPAAMVLPTI DPRLGQATFY MKTGDCKFGE RCKYHHPIDR 360 TAATQSMPKQ DVKLTLAGLP RREGAVVCPF YMKTGACKYG SSCRFDHPPP GEAVAMATVV 420 QGSSSAPLSG KAVAMATTVQ GSSSAPPLGE AVAMPTVTQG SSFAAEDGES NNNNNTIVPE 480 VAISFGSTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-173 | C3H family protein |