PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026395058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 53529.4 Da PI: 8.1466 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.9 | 2.3e-10 | 79 | 103 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C +++ t tC++Gd+CkF H+ XP_026395058.1 79 GETDCAHYMLTRTCRFGDTCKFDHP 103 6789********************8 PP | |||||||
2 | zf-CCCH | 25.9 | 1.7e-08 | 130 | 156 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026395058.1 130 PGEPACPYFLKTKKCRFGFKCKFNHPK 156 57899********************96 PP | |||||||
3 | zf-CCCH | 40.7 | 3.8e-13 | 180 | 203 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tG+Ck+G++CkF+H++ XP_026395058.1 180 PPCSFYMKTGICKFGESCKFHHPK 203 89********************96 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 254 | 280 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026395058.1 254 PGEVDCPFYLKTGSCKYGATCRYSHPE 280 57899********************96 PP | |||||||
5 | zf-CCCH | 37.9 | 2.9e-12 | 340 | 364 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C f+++tG Ck+G+rCk++H+ XP_026395058.1 340 GQTECEFYMKTGDCKFGERCKYHHP 364 6789********************8 PP | |||||||
6 | zf-CCCH | 41.5 | 2.3e-13 | 393 | 416 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026395058.1 393 VVCPFYMKTGACKYGSSCRFDHPP 416 67********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence |
MTDIGFLQFH NSPYGHLVLT RLLLSALVLL VLSVLLPKTY LGTSNTFGQS EAFYSANNLS 60 KRPRFESTSH LPIYPQRPGE TDCAHYMLTR TCRFGDTCKF DHPIWVPEGG IPDWKEVPLV 120 PLGDTLPERP GEPACPYFLK TKKCRFGFKC KFNHPKDITK SVDASKIVDL SLLPERPYAP 180 PCSFYMKTGI CKFGESCKFH HPKDIQIPVT GQENGCAEHD ASVGSFDSIM SVKPPFVPFT 240 PASLHNTKGL PVRPGEVDCP FYLKTGSCKY GATCRYSHPE RAVISISVAP GLGHAMMTSS 300 ASSMNVGLIN PAAMVLPTID PRLGQATLGL GVAVYPQRPG QTECEFYMKT GDCKFGERCK 360 YHHPIDRTAA TQSMPKQDVK LTLAGLPRRE GAVVCPFYMK TGACKYGSSC RFDHPPPGEA 420 VAMATVVQGS SSAPLSGKAV AMATTVQGSS SAPPLGEAVA MPTVTQGSSF AAEDGESNNN 480 NNTIVPEVAI SFGSTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-176 | C3H family protein |