PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026395056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 507aa    MW: 54908.5 Da    PI: 8.1229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026395056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.3e-1090114226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C +++ t tC++Gd+CkF H+
  XP_026395056.1  90 GETDCAHYMLTRTCRFGDTCKFDHP 114
                     6789********************8 PP

2zf-CCCH25.91.7e-08141167127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f++t  C++G +CkF+H++
  XP_026395056.1 141 PGEPACPYFLKTKKCRFGFKCKFNHPK 167
                     57899********************96 PP

3zf-CCCH40.73.9e-13191214427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+f+++tG+Ck+G++CkF+H++
  XP_026395056.1 191 PPCSFYMKTGICKFGESCKFHHPK 214
                     89********************96 PP

4zf-CCCH38.42e-12265291127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+f+++tG CkyG++C+++H++
  XP_026395056.1 265 PGEVDCPFYLKTGSCKYGATCRYSHPE 291
                     57899********************96 PP

5zf-CCCH37.93e-12351375226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C f+++tG Ck+G+rCk++H+
  XP_026395056.1 351 GQTECEFYMKTGDCKFGERCKYHHP 375
                     6789********************8 PP

6zf-CCCH41.42.3e-13404427427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C+f+++tG CkyG++C+F H+p
  XP_026395056.1 404 VVCPFYMKTGACKYGSSCRFDHPP 427
                     67********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSPCFAGTKR TSSEALYHQT YLGTSNTFGQ  60
SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCAHYMLT RTCRFGDTCK FDHPIWVPEG  120
GIPDWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIT KSVDASKIVD  180
LSLLPERPYA PPCSFYMKTG ICKFGESCKF HHPKDIQIPV TGQENGCAEH DASVGSFDSI  240
MSVKPPFVPF TPASLHNTKG LPVRPGEVDC PFYLKTGSCK YGATCRYSHP ERAVISISVA  300
PGLGHAMMTS SASSMNVGLI NPAAMVLPTI DPRLGQATLG LGVAVYPQRP GQTECEFYMK  360
TGDCKFGERC KYHHPIDRTA ATQSMPKQDV KLTLAGLPRR EGAVVCPFYM KTGACKYGSS  420
CRFDHPPPGE AVAMATVVQG SSSAPLSGKA VAMATTVQGS SSAPPLGEAV AMPTVTQGSS  480
FAAEDGESNN NNNTIVPEVA ISFGSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein