PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026394167.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

HB-PHD

Protein Properties

Length: 1417aa MW: 154718 Da PI: 5.837

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026394167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35	2.5e-11	1027	1073	10	56
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++L e+ ++n yp+ e++e+LA++lgLt +qV WF N R + XP_026394167.1 1027 DVAQRLFEALKENEYPTPETKEKLAEELGLTVQQVNKWFNNTRWSLR 1073 556667777779******************************97665 PP
2	PHD	37	7.9e-13	547	602	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C + fH+kCl+ +l +ee+p g wlC+ C++k XP_026394167.1 547 FCAKCGSkeLSTDNDIILCDGfCTRGFHQKCLDSPLLNEEIPPGdeGWLCPACDCK 602 6999977777****88****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1417 aa Download sequence
MDVTSPIQED CLIAKCPGSK QEAGDQTHEF SFGNGQTKAV DTSSSTKENS LRMENSSSLN 60 SLEQKHDCGP EDVHHDTNSS QTKENDIKIT STILEQSILN KKIESRAGEE QTAAIEFTFT 120 KQSSSLEQIV LDKKEKSTIE DSQVTVIDVT IPPIKSSSPQ QNILEQKQES DFQVAQSEVI 180 DVACPTQENS PTINTKENVT GDVQCDTNSS QTKENGFVTT NSSLEQSILD QKDETGVGNE 240 QTAAIDLTLP ARENGTLQCL SIKLSILDQK LESTAEDVKI MSDVTLPTQE NSSPVKSSGH 300 EQNILEQKQE SGFEAVQHEA IDIASPILED SLRIKNPSPK QNLVEQKLEP DNGDGQSETP 360 ASKFAGHGIG DNELLETPNL SKNVEVSEPK KHRGSPNSKK KKHAVRSALR SPRVLRSRLR 420 DTSKAPDPVG VSENINTEVA KTRKKRKRTN KTLDNVFEKT KKRVRYLLNK TNYEHSLIEA 480 YSGDGWKGLS AEKVRPEKEL QRATAEILRC KLKIRDMFQH IESLCDEGKF QESLFDSDGE 540 IDSEDIFCAK CGSKELSTDN DIILCDGFCT RGFHQKCLDS PLLNEEIPPG DEGWLCPACD 600 CKADCIDLLN DNLGTDLSIE DNWEKVFPEA GTTTAGNKLE DYLGLPSDDS EDDDYDPDRL 660 DLDEQKDEEG SSSDESDCSS ASDDAEDLPQ KDPYLGLPSD DSDDDDYNPD AMDVDEQVNK 720 DESSSSGFSS DSGDSAPLSD DGKGSLGGDE VRTPSSVDGP NPLHGSDHQG PKKTKGKKET 780 INPELRSILE QGDASPISGK RTRKQFDYKK LHDETYGNVS SDSSDDEDWV DADGVGEGKN 840 SGGGNESVLS PIENSRTTRS GSNSKTTKNS SKKKENEQER SRQKLDFENA KNIVSVSQKE 900 GKEPDLSKKR ASASNRRGKA VAQETHVSSD SREHEDLVDV DGVGTKKDGQ GKESVLSSNE 960 NYKTPGRGEN AKNTSTLKRK SDNKEKISAK KLKFGGANNT ASGSGNQGLE PDSIEKRASA 1020 ATKLGKDVAQ RLFEALKENE YPTPETKEKL AEELGLTVQQ VNKWFNNTRW SLRHSSGKKN 1080 KASPSKIKHV QTNGKNSDTE QSSLPNSDAI VNVMPEQEPG SAVADKAGKR DKASPSKNAL 1140 AQTSGKTGKA KQKNVLDSKA VSNVKQEREL SSAVNGKAAK RDNKASPSKS KLAQTNGKGA 1200 KAKEKKTPGR VAVSKAKQEQ NPGSPINNKA VAAESSPQKS LSSNLRNKRR KTDVEDKTST 1260 EVQTTVKSSN PAGSSKSQTP PRRSSQRNTK QEATQTQEVQ TPVKPSNPAG SSTSETPLRR 1320 SSQRNTKQEA TQKQEVQTPV KPSRPEGSSK SPAPPRRSSQ RNTKQEATQT QEVQTPAKPN 1380 KPTGFSKSQT PTRRSSRNTK QEVTQTQVRT RSRRSIG

Sequence ? help Back to Top

Protein Sequence Length: 1417 aa Download sequence

MDVTSPIQED CLIAKCPGSK QEAGDQTHEF SFGNGQTKAV DTSSSTKENS LRMENSSSLN  60
SLEQKHDCGP EDVHHDTNSS QTKENDIKIT STILEQSILN KKIESRAGEE QTAAIEFTFT  120
KQSSSLEQIV LDKKEKSTIE DSQVTVIDVT IPPIKSSSPQ QNILEQKQES DFQVAQSEVI  180
DVACPTQENS PTINTKENVT GDVQCDTNSS QTKENGFVTT NSSLEQSILD QKDETGVGNE  240
QTAAIDLTLP ARENGTLQCL SIKLSILDQK LESTAEDVKI MSDVTLPTQE NSSPVKSSGH  300
EQNILEQKQE SGFEAVQHEA IDIASPILED SLRIKNPSPK QNLVEQKLEP DNGDGQSETP  360
ASKFAGHGIG DNELLETPNL SKNVEVSEPK KHRGSPNSKK KKHAVRSALR SPRVLRSRLR  420
DTSKAPDPVG VSENINTEVA KTRKKRKRTN KTLDNVFEKT KKRVRYLLNK TNYEHSLIEA  480
YSGDGWKGLS AEKVRPEKEL QRATAEILRC KLKIRDMFQH IESLCDEGKF QESLFDSDGE  540
IDSEDIFCAK CGSKELSTDN DIILCDGFCT RGFHQKCLDS PLLNEEIPPG DEGWLCPACD  600
CKADCIDLLN DNLGTDLSIE DNWEKVFPEA GTTTAGNKLE DYLGLPSDDS EDDDYDPDRL  660
DLDEQKDEEG SSSDESDCSS ASDDAEDLPQ KDPYLGLPSD DSDDDDYNPD AMDVDEQVNK  720
DESSSSGFSS DSGDSAPLSD DGKGSLGGDE VRTPSSVDGP NPLHGSDHQG PKKTKGKKET  780
INPELRSILE QGDASPISGK RTRKQFDYKK LHDETYGNVS SDSSDDEDWV DADGVGEGKN  840
SGGGNESVLS PIENSRTTRS GSNSKTTKNS SKKKENEQER SRQKLDFENA KNIVSVSQKE  900
GKEPDLSKKR ASASNRRGKA VAQETHVSSD SREHEDLVDV DGVGTKKDGQ GKESVLSSNE  960
NYKTPGRGEN AKNTSTLKRK SDNKEKISAK KLKFGGANNT ASGSGNQGLE PDSIEKRASA  1020
ATKLGKDVAQ RLFEALKENE YPTPETKEKL AEELGLTVQQ VNKWFNNTRW SLRHSSGKKN  1080
KASPSKIKHV QTNGKNSDTE QSSLPNSDAI VNVMPEQEPG SAVADKAGKR DKASPSKNAL  1140
AQTSGKTGKA KQKNVLDSKA VSNVKQEREL SSAVNGKAAK RDNKASPSKS KLAQTNGKGA  1200
KAKEKKTPGR VAVSKAKQEQ NPGSPINNKA VAAESSPQKS LSSNLRNKRR KTDVEDKTST  1260
EVQTTVKSSN PAGSSKSQTP PRRSSQRNTK QEATQTQEVQ TPVKPSNPAG SSTSETPLRR  1320
SSQRNTKQEA TQKQEVQTPV KPSRPEGSSK SPAPPRRSSQ RNTKQEATQT QEVQTPAKPN  1380
KPTGFSKSQT PTRRSSRNTK QEVTQTQVRT RSRRSIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	443	448	RKKRKR
2	444	449	KKRKRT
3	978	993	KRKSDNKEKISAKKLK
4	1282	1288	RRSSQRN
5	1319	1325	RRSSQRN
6	1356	1362	RRSSQRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-87	HB-PHD family protein