PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026393718.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 705aa MW: 78157.7 Da PI: 5.9831

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026393718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	97	124	2	26
-S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartG...tCkyGdrCkFaHg 26 kt +C+ a+tG C yG C+F+H+ XP_026393718.1 97 KTGICPKVAKTGcvsSCTYGTDCRFSHD 124 899************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MDGASTIEEV EAVETPTVIS NPVANVVLTP EELIAKSIAP VKKEFLRPPQ HTRPCPNVKG 60 EDGVSSETNE SDGYHSKYSK NTKSKRQLKR ERQEEKKTGI CPKVAKTGCV SSCTYGTDCR 120 FSHDVDAYKA QKPVDLEGNC PFLSLEGPCP YGLACRYSGT HKDENAMEIV GMGNERYETN 180 ELKKAVQKLL WKNVMTFPKA DAQLKALGIL DNYKLKKGKA KGEGGEVEKV EVEGEVEMVE 240 ADQGIVNGSS TAFENDSGEN GASTNKTECT EEVKLEEGNV KISLSTDGPR PIKMAKHSNG 300 EPCSDDMDNG SMKNDLEMRT EVEASQTDDI SSEADACLKL HPREKKLIDF SGKLYLAPLT 360 TVGNLPFRRV CKNLGADITC GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGSFPDT 420 IARTVELIDR ECTVDFIDIN MGCPIDLVVD KGAGSCLLTK PVRMKGIIKA ASATVDTPIT 480 VKVRTAYFEG KNRIDSLISD IGSWGATALT IHGRSRQQRY SKLADWDYIY QCARKAPDSL 540 QVLGNGDIFS YVDWNKHLSD CPKISACMIA RGSLIKPWLF TEIKEQRHWD ISSSERLGIY 600 KDYVRCGLQH WGSDTKGVET TRYFLLEWLS YLYRYIPVGL LDVVPSKLNW RSPSFYGRDD 660 LETLMASESA ADWIRISEML LGKVPAGFHF APKHKSNAYD KAENG

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MDGASTIEEV EAVETPTVIS NPVANVVLTP EELIAKSIAP VKKEFLRPPQ HTRPCPNVKG  60
EDGVSSETNE SDGYHSKYSK NTKSKRQLKR ERQEEKKTGI CPKVAKTGCV SSCTYGTDCR  120
FSHDVDAYKA QKPVDLEGNC PFLSLEGPCP YGLACRYSGT HKDENAMEIV GMGNERYETN  180
ELKKAVQKLL WKNVMTFPKA DAQLKALGIL DNYKLKKGKA KGEGGEVEKV EVEGEVEMVE  240
ADQGIVNGSS TAFENDSGEN GASTNKTECT EEVKLEEGNV KISLSTDGPR PIKMAKHSNG  300
EPCSDDMDNG SMKNDLEMRT EVEASQTDDI SSEADACLKL HPREKKLIDF SGKLYLAPLT  360
TVGNLPFRRV CKNLGADITC GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGSFPDT  420
IARTVELIDR ECTVDFIDIN MGCPIDLVVD KGAGSCLLTK PVRMKGIIKA ASATVDTPIT  480
VKVRTAYFEG KNRIDSLISD IGSWGATALT IHGRSRQQRY SKLADWDYIY QCARKAPDSL  540
QVLGNGDIFS YVDWNKHLSD CPKISACMIA RGSLIKPWLF TEIKEQRHWD ISSSERLGIY  600
KDYVRCGLQH WGSDTKGVET TRYFLLEWLS YLYRYIPVGL LDVVPSKLNW RSPSFYGRDD  660
LETLMASESA ADWIRISEML LGKVPAGFHF APKHKSNAYD KAENG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	5e-06	C3H family protein