PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026393717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 707aa MW: 78315.8 Da PI: 5.9831 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 97 | 124 | 2 | 26 |
-S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartG...tCkyGdrCkFaHg 26 kt +C+ a+tG C yG C+F+H+ XP_026393717.1 97 KTGICPKVAKTGcvsSCTYGTDCRFSHD 124 899************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence |
MDGASTIEEV EAVETPTVIS NPVANVVLTP EELIAKSIAP VKKEFLRPPQ HTRPCPNVKG 60 EDGVSSETNE SDGYHSKYSK NTKSKRQLKR ERQEEKKTGI CPKVAKTGCV SSCTYGTDCR 120 FSHDVDAYKA QKPVDLEGNC PFLSLEGPCP YGLACRYSGT HKDENAMEIV GMGNERYETN 180 ELKKAVQKLL WKNVMTFPKA DAQLKALGIL DNYKLKKGKA KGEGGEVEKV EVEGEVEMVE 240 ADQGIVNGSS TAFENDSGEN GASTNKTECT EEVKLEEGNV KISLSTDGPR PIKMAKHSNG 300 EPCSDDMDNG TGSMKNDLEM RTEVEASQTD DISSEADACL KLHPREKKLI DFSGKLYLAP 360 LTTVGNLPFR RVCKNLGADI TCGEMAMCTN LLQGQASEWA LLRRHSSEDL FGVQICGSFP 420 DTIARTVELI DRECTVDFID INMGCPIDLV VDKGAGSCLL TKPVRMKGII KAASATVDTP 480 ITVKVRTAYF EGKNRIDSLI SDIGSWGATA LTIHGRSRQQ RYSKLADWDY IYQCARKAPD 540 SLQVLGNGDI FSYVDWNKHL SDCPKISACM IARGSLIKPW LFTEIKEQRH WDISSSERLG 600 IYKDYVRCGL QHWGSDTKGV ETTRYFLLEW LSYLYRYIPV GLLDVVPSKL NWRSPSFYGR 660 DDLETLMASE SAADWIRISE MLLGKVPAGF HFAPKHKSNA YDKAENG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 5e-06 | C3H family protein |