PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026389960.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 335aa MW: 38310.6 Da PI: 7.3415

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026389960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	196	221	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C +Gd+CkF+H+ XP_026389960.1 196 YQPDICKDYKETGYCGFGDSCKFMHD 221 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MADSEPSNLP ERSTEPSSTN PVKEPVCSFF RKPSKNKNIR KRKNDDEEED NGEEGSSVIQ 60 KPKLAPKADN KLHFSTKHVA ETNQEPDESR RFHFESSKVI QVQHDSRATA TLETETDFSN 120 DARAIRERVL KRAEEALKKN KDKKPSDEKL YKGIHGYTDF KAGFRREHTV AGEKAGGAHG 180 PLRASAHIRT SARWDYQPDI CKDYKETGYC GFGDSCKFMH DRGDYKSGWQ MEREWEEAEK 240 IRKRNLALKA DDDDEDENEK ANASDDDEDA LPFACFICRQ AFVDPVVTKC KHYFCEHCAL 300 KHHSKNKKCF VCNTPTLGMF NTAHEIKRKM AAEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-136	C3H family protein