PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026389959.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 339aa MW: 38752.1 Da PI: 7.3415

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026389959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.8	6.3e-12	200	225	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C +Gd+CkF+H+ XP_026389959.1 200 YQPDICKDYKETGYCGFGDSCKFMHD 225 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MADSEPSNLP ERSTEPSSTN PVKEPSKEPV CSFFRKPSKN KNIRKRKNDD EEEDNGEEGS 60 SVIQKPKLAP KADNKLHFST KHVAETNQEP DESRRFHFES SKVIQVQHDS RATATLETET 120 DFSNDARAIR ERVLKRAEEA LKKNKDKKPS DEKLYKGIHG YTDFKAGFRR EHTVAGEKAG 180 GAHGPLRASA HIRTSARWDY QPDICKDYKE TGYCGFGDSC KFMHDRGDYK SGWQMEREWE 240 EAEKIRKRNL ALKADDDDED ENEKANASDD DEDALPFACF ICRQAFVDPV VTKCKHYFCE 300 HCALKHHSKN KKCFVCNTPT LGMFNTAHEI KRKMAAEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-136	C3H family protein