PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026388612.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

GRF

Protein Properties

Length: 610aa MW: 66420.4 Da PI: 7.9822

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026388612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	230	274	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_026388612.1 230 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 274 79****************************************985 PP
2	QLQ	62.6	1e-21	161	197	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k XP_026388612.1 161 GPFTPNQWMELEHQALIYKYINANVPIPSNLLIPIRK 197 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MDFGVAGFDG MMGSSEINGF PSLGSSDVDQ TRQKGYGSGF NKQERSGSAE DNWRSLKMSR 60 ADDFCNTGSK TMLFQHRNNS SSLRSNSLFS DNGQAQTQML SFSSPKSDPF LLNNNNDGGL 120 MERSLQNSTL PYSYHHTSST IPRTTGSFSS GMHGVLSGVR GPFTPNQWME LEHQALIYKY 180 INANVPIPSN LLIPIRKAQN LTGFPGFGGS IRPNTLGWGS FHMGFSSNTD PEPGRCRRTD 240 GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQITGQA GSGPATAKAI QMGSSSASVV 300 ANSVASNGVS IAQYPIKNLQ ASALDASVNT QINRNFLNKD MGSRMQESQG LSMLSPTMNM 360 RSKDSLFSIT KQHNPFEESS RSEFGFVPTD SLLNPSERSS YFGSSADLND PEPQDQHPLR 420 HFMDDWPKNR SDRSAMSWPE MEEIQSDRTQ LSISIPVPSS DFSSASSSPT HDKLALSPLR 480 LSREFDPTQM GLGVGTIINE PTHRQASWIP ISWENSMGGP LGEVLNNTNS NAGDSKNSSG 540 LNLMTVGWDS SPRMGSSPTG VLQKTTFGSL SNSSTASSPR ADTNKTHDRN SLCDDLLGSA 600 FVNSSSIPSM

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MDFGVAGFDG MMGSSEINGF PSLGSSDVDQ TRQKGYGSGF NKQERSGSAE DNWRSLKMSR  60
ADDFCNTGSK TMLFQHRNNS SSLRSNSLFS DNGQAQTQML SFSSPKSDPF LLNNNNDGGL  120
MERSLQNSTL PYSYHHTSST IPRTTGSFSS GMHGVLSGVR GPFTPNQWME LEHQALIYKY  180
INANVPIPSN LLIPIRKAQN LTGFPGFGGS IRPNTLGWGS FHMGFSSNTD PEPGRCRRTD  240
GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQITGQA GSGPATAKAI QMGSSSASVV  300
ANSVASNGVS IAQYPIKNLQ ASALDASVNT QINRNFLNKD MGSRMQESQG LSMLSPTMNM  360
RSKDSLFSIT KQHNPFEESS RSEFGFVPTD SLLNPSERSS YFGSSADLND PEPQDQHPLR  420
HFMDDWPKNR SDRSAMSWPE MEEIQSDRTQ LSISIPVPSS DFSSASSSPT HDKLALSPLR  480
LSREFDPTQM GLGVGTIINE PTHRQASWIP ISWENSMGGP LGEVLNNTNS NAGDSKNSSG  540
LNLMTVGWDS SPRMGSSPTG VLQKTTFGSL SNSSTASSPR ADTNKTHDRN SLCDDLLGSA  600
FVNSSSIPSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-104	GRF family protein