PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026387998.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

bHLH

Protein Properties

Length: 580aa MW: 64200.7 Da PI: 6.9163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026387998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.7e-16	366	412	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_026387998.1 366 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 412 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MNRWCVPDFE VEEDHHLIPS SSGLHRPPNN KPSKHGGDEL VELLWENGQL VNQNHKSHRK 60 KTHHYSNSKY PYQSPQDDFG GASISGRREF QDMGSRLMEE TGEGGAATGS QHLFMEEDEM 120 ASWLHYPLSP DDNSAFRPRF GADDNHNNLV YATQFGGDYT PPQPQPQPPV NRITQIIDDH 180 PTEHKLPAPT PPEHKLPAPT PPTPPEHKFS AAAPTPAPHR PPIPTPMSSS SSSKFHNFGH 240 FSRHKMLQSD ESQPTTSDKM RTGSAVLGSS CETPPMWASK SSDTAVPEKD EAAVASEQMT 300 TRTSSSAGSG AGAEPSTKMP TEDRKRKARE TDEQEYQSED DKFESVDTKK QARGSTSARR 360 ARAAEVHNLS ERRRRDRINE KMKALQELIP RCNKSDKASM LDEAIEYLKS LQLQVQMMSM 420 GCGMVPMMFP PGVQQYMSPM GMGMGMGMDF GLNRPIMMPY TSVLAPRPPH LGQTPPVPGF 480 RVPPPPANTN NSLRPPIFPA DPYQNYFNSL HMQVPRRPDQ NESMAQPCPS KGARVTTTTS 540 LDDPCFTATT VKETDAGTNL QFGGSRDTTL KITQAGSRPI

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MNRWCVPDFE VEEDHHLIPS SSGLHRPPNN KPSKHGGDEL VELLWENGQL VNQNHKSHRK  60
KTHHYSNSKY PYQSPQDDFG GASISGRREF QDMGSRLMEE TGEGGAATGS QHLFMEEDEM  120
ASWLHYPLSP DDNSAFRPRF GADDNHNNLV YATQFGGDYT PPQPQPQPPV NRITQIIDDH  180
PTEHKLPAPT PPEHKLPAPT PPTPPEHKFS AAAPTPAPHR PPIPTPMSSS SSSKFHNFGH  240
FSRHKMLQSD ESQPTTSDKM RTGSAVLGSS CETPPMWASK SSDTAVPEKD EAAVASEQMT  300
TRTSSSAGSG AGAEPSTKMP TEDRKRKARE TDEQEYQSED DKFESVDTKK QARGSTSARR  360
ARAAEVHNLS ERRRRDRINE KMKALQELIP RCNKSDKASM LDEAIEYLKS LQLQVQMMSM  420
GCGMVPMMFP PGVQQYMSPM GMGMGMGMDF GLNRPIMMPY TSVLAPRPPH LGQTPPVPGF  480
RVPPPPANTN NSLRPPIFPA DPYQNYFNSL HMQVPRRPDQ NESMAQPCPS KGARVTTTTS  540
LDDPCFTATT VKETDAGTNL QFGGSRDTTL KITQAGSRPI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	371	376	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	1e-32	bHLH family protein