PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026386945.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 404aa MW: 44670.7 Da PI: 8.8638

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026386945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45.4	1.3e-14	329	353	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd C+FaHg XP_026386945.1 329 KTELCNKWQETGVCPYGDHCQFAHG 353 9***********************8 PP
2	zf-CCCH	23.1	1.3e-07	366	390	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr + +G+C+yG rC+F H XP_026386945.1 366 YKTEVCRMVLNGGFCPYGHRCHFRH 390 9**********************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MQKNDSSKSQ DSSSSMKSSI DYQTPIRSLS NVEYYYVPAS PNHKSSSSGG DSRFSSQNSS 60 TFPPKSSICN SIYLTPSSSS SSSNEENNQI TKEDRLYLAR VILLYEQLMD RYELCWSYLE 120 DSSRKVDILS QENAALRLLN RDLINRLSLS TEVSGNHQKN HRSAYISSGF PTLSIIKDFP 180 SLNIGDNGGS TGGGGGPKND NRVAPSREAP VTSPTSVIGN NSKGFDEKPV QVQADRVSLP 240 KSISIRSSAY LKMNQSNNPA ATNTTAPSFN KTANRLCVAS KPFIPSTAPR VNLPTVPAVG 300 ENKKGVDDQK EKKEEDPLEL DVYNQGMSKT ELCNKWQETG VCPYGDHCQF AHGIRELRPV 360 IRHPRYKTEV CRMVLNGGFC PYGHRCHFRH ALTDQEKRTG ITHS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MQKNDSSKSQ DSSSSMKSSI DYQTPIRSLS NVEYYYVPAS PNHKSSSSGG DSRFSSQNSS  60
TFPPKSSICN SIYLTPSSSS SSSNEENNQI TKEDRLYLAR VILLYEQLMD RYELCWSYLE  120
DSSRKVDILS QENAALRLLN RDLINRLSLS TEVSGNHQKN HRSAYISSGF PTLSIIKDFP  180
SLNIGDNGGS TGGGGGPKND NRVAPSREAP VTSPTSVIGN NSKGFDEKPV QVQADRVSLP  240
KSISIRSSAY LKMNQSNNPA ATNTTAPSFN KTANRLCVAS KPFIPSTAPR VNLPTVPAVG  300
ENKKGVDDQK EKKEEDPLEL DVYNQGMSKT ELCNKWQETG VCPYGDHCQF AHGIRELRPV  360
IRHPRYKTEV CRMVLNGGFC PYGHRCHFRH ALTDQEKRTG ITHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	3e-53	C3H family protein