PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026386515.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 298aa    MW: 34477.6 Da    PI: 6.3799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026386515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.4e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklyey+s
  XP_026386515.1  9 KLIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSKGKLYEYCS 59
                    569**********************************************96 PP
2K-box86.65.2e-298917613100
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + + +q++ kLk++ e Lq+++R+l+GedL++Ls++eL+qLe+qLe slk++Rs++++++++++ elq+ke+ l+e+nk+L+kk++e
  XP_026386515.1  89 VEDETYQDYLKLKARAEVLQQNNRNLQGEDLGPLSVNELEQLENQLEVSLKQVRSTRTRYMFDHLTELQQKEQLLREANKSLNKKMDE 176
                     4567899******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MGRGRVELKL IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS KGKLYEYCSS  60
SSMLKTLERY QRNTNSSTSQ SSEIVAFDVE DETYQDYLKL KARAEVLQQN NRNLQGEDLG  120
PLSVNELEQL ENQLEVSLKQ VRSTRTRYMF DHLTELQQKE QLLREANKSL NKKMDEDKAE  180
IDLQLSWQAG EQRRQQQVDD HRALQLSWQE GEQRRQQQQM DEHKAEMALQ WSWQAAEQQR  240
QIAAYNHHIN AAASERFFQP LECSPSLQSG NSLSNASNMM NSAAPVQNLL GFFPGWTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-63MIKC_MADS family protein