PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026381896.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 491aa MW: 54963.6 Da PI: 7.5996

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026381896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.3	7.4e-10	75	100	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f rtG C+yG +C+++H+ XP_026381896.1 75 PGEADCAHFVRTGSCRYGLKCRYNHP 100 57899********************9 PP
2	zf-CCCH	33.7	6e-11	161	186	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG +C+++H+ XP_026381896.1 161 PGEPDCGHYLRTGACRYGLNCRYNHP 186 5789*********************8 PP
3	zf-CCCH	31.4	3.3e-10	201	226	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G CkyG +C+F H XP_026381896.1 201 PGQVECKYYLRPGGCKYGTTCRFQHI 226 5789*********************5 PP
4	zf-CCCH	29	1.9e-09	248	272	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++r+G Ck+ +C+F+H+ XP_026381896.1 248 GETECPHYMRNGSCKFALNCRFHHP 272 7789********************8 PP
5	zf-CCCH	24.7	4.1e-08	396	421	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +f+++G Ck+ + CkF H++ XP_026381896.1 396 GEKECEYFMKNGDCKFKSYCKFDHPK 421 7899********************96 PP
6	zf-CCCH	32.8	1.1e-10	442	464	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++r+G+Ck+G+ C++ H+p XP_026381896.1 442 ACSYYSRYGICKFGPACRYDHPP 464 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MVSIKELEDG DERLVFGSDS STSETAAAAV DVSVDDISLE GKIDNLGLGI KGKVSSFQRP 60 HDDENHNQNN HPVRPGEADC AHFVRTGSCR YGLKCRYNHP TRNKKVQVGN GKDKETEGFK 120 ERQWQLNRGF ERKQSQSWGD SAIEEEEEAE VNGSLHHPVR PGEPDCGHYL RTGACRYGLN 180 CRYNHPSRSK RQEKEGYEET PGQVECKYYL RPGGCKYGTT CRFQHIQENP AVASTLDLNF 240 LGLPVRPGET ECPHYMRNGS CKFALNCRFH HPNPTDVGVR DPHLRYQNCR PSPVPSSVLS 300 QPGVPFWSMA RTSNETMVSY MDAAPSYAPL LSAPQGVHPS MEWNGYLPPQ QNPMYPPAVN 360 MGPPVPLILN GPSKKTGGFA HYQQQMPIDE YPERPGEKEC EYFMKNGDCK FKSYCKFDHP 420 KNRASKCVLS PMGLPLRPEE IACSYYSRYG ICKFGPACRY DHPPNSGSSI SGVVRMGSHG 480 NVRQGLIQQE V

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MVSIKELEDG DERLVFGSDS STSETAAAAV DVSVDDISLE GKIDNLGLGI KGKVSSFQRP  60
HDDENHNQNN HPVRPGEADC AHFVRTGSCR YGLKCRYNHP TRNKKVQVGN GKDKETEGFK  120
ERQWQLNRGF ERKQSQSWGD SAIEEEEEAE VNGSLHHPVR PGEPDCGHYL RTGACRYGLN  180
CRYNHPSRSK RQEKEGYEET PGQVECKYYL RPGGCKYGTT CRFQHIQENP AVASTLDLNF  240
LGLPVRPGET ECPHYMRNGS CKFALNCRFH HPNPTDVGVR DPHLRYQNCR PSPVPSSVLS  300
QPGVPFWSMA RTSNETMVSY MDAAPSYAPL LSAPQGVHPS MEWNGYLPPQ QNPMYPPAVN  360
MGPPVPLILN GPSKKTGGFA HYQQQMPIDE YPERPGEKEC EYFMKNGDCK FKSYCKFDHP  420
KNRASKCVLS PMGLPLRPEE IACSYYSRYG ICKFGPACRY DHPPNSGSSI SGVVRMGSHG  480
NVRQGLIQQE V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	2e-88	C3H family protein