PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026381895.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 501aa    MW: 56026.6 Da    PI: 7.3741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026381895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.6e-1075100126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f rtG C+yG +C+++H+
  XP_026381895.1  75 PGEADCAHFVRTGSCRYGLKCRYNHP 100
                     57899********************9 PP

2zf-CCCH33.76.1e-11159184126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +++rtG C+yG +C+++H+
  XP_026381895.1 159 PGEPDCGHYLRTGACRYGLNCRYNHP 184
                     5789*********************8 PP

3zf-CCCH31.43.3e-10211236126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++r G CkyG +C+F H 
  XP_026381895.1 211 PGQVECKYYLRPGGCKYGTTCRFQHI 236
                     5789*********************5 PP

4zf-CCCH28.91.9e-09258282226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C++++r+G Ck+  +C+F+H+
  XP_026381895.1 258 GETECPHYMRNGSCKFALNCRFHHP 282
                     7789********************8 PP

5zf-CCCH24.74.2e-08406431227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C +f+++G Ck+ + CkF H++
  XP_026381895.1 406 GEKECEYFMKNGDCKFKSYCKFDHPK 431
                     7899********************96 PP

6zf-CCCH32.81.2e-10452474527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++r+G+Ck+G+ C++ H+p
  XP_026381895.1 452 ACSYYSRYGICKFGPACRYDHPP 474
                     6********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    
MVSIKELEDG DERLVFGSDS STSETAAAAV DVSVDDISLE GKIDNLGLGI KGKVSSFQRP  60
HDDENHNQNN HPVRPGEADC AHFVRTGSCR YGLKCRYNHP TRNKKVGNGK DKETEGFKER  120
QWQLNRGFER KQSQSWGDSA IEEEEEAEVN GSLHHPVRPG EPDCGHYLRT GACRYGLNCR  180
YNHPSRSKRQ VHSSSVSHEP DQEKEGYEET PGQVECKYYL RPGGCKYGTT CRFQHIQENP  240
AVASTLDLNF LGLPVRPGET ECPHYMRNGS CKFALNCRFH HPNPTDVGVR DPHLRYQNCR  300
PSPVPSSVLS QPGVPFWSMA RTSNETMVSY MDAAPSYAPL LSAPQGVHPS MEWNGYLPPQ  360
QNPMYPPAVN MGPPVPLILN GPSKKTGGFA HYQQQMPIDE YPERPGEKEC EYFMKNGDCK  420
FKSYCKFDHP KNRASKCVLS PMGLPLRPEE IACSYYSRYG ICKFGPACRY DHPPNSGSSI  480
SGVVRMGSHG NVRQGLIQQE V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-89C3H family protein