PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026381895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 501aa MW: 56026.6 Da PI: 7.3741 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.2 | 7.6e-10 | 75 | 100 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f rtG C+yG +C+++H+ XP_026381895.1 75 PGEADCAHFVRTGSCRYGLKCRYNHP 100 57899********************9 PP | |||||||
2 | zf-CCCH | 33.7 | 6.1e-11 | 159 | 184 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG +C+++H+ XP_026381895.1 159 PGEPDCGHYLRTGACRYGLNCRYNHP 184 5789*********************8 PP | |||||||
3 | zf-CCCH | 31.4 | 3.3e-10 | 211 | 236 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G CkyG +C+F H XP_026381895.1 211 PGQVECKYYLRPGGCKYGTTCRFQHI 236 5789*********************5 PP | |||||||
4 | zf-CCCH | 28.9 | 1.9e-09 | 258 | 282 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++r+G Ck+ +C+F+H+ XP_026381895.1 258 GETECPHYMRNGSCKFALNCRFHHP 282 7789********************8 PP | |||||||
5 | zf-CCCH | 24.7 | 4.2e-08 | 406 | 431 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +f+++G Ck+ + CkF H++ XP_026381895.1 406 GEKECEYFMKNGDCKFKSYCKFDHPK 431 7899********************96 PP | |||||||
6 | zf-CCCH | 32.8 | 1.2e-10 | 452 | 474 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++r+G+Ck+G+ C++ H+p XP_026381895.1 452 ACSYYSRYGICKFGPACRYDHPP 474 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence |
MVSIKELEDG DERLVFGSDS STSETAAAAV DVSVDDISLE GKIDNLGLGI KGKVSSFQRP 60 HDDENHNQNN HPVRPGEADC AHFVRTGSCR YGLKCRYNHP TRNKKVGNGK DKETEGFKER 120 QWQLNRGFER KQSQSWGDSA IEEEEEAEVN GSLHHPVRPG EPDCGHYLRT GACRYGLNCR 180 YNHPSRSKRQ VHSSSVSHEP DQEKEGYEET PGQVECKYYL RPGGCKYGTT CRFQHIQENP 240 AVASTLDLNF LGLPVRPGET ECPHYMRNGS CKFALNCRFH HPNPTDVGVR DPHLRYQNCR 300 PSPVPSSVLS QPGVPFWSMA RTSNETMVSY MDAAPSYAPL LSAPQGVHPS MEWNGYLPPQ 360 QNPMYPPAVN MGPPVPLILN GPSKKTGGFA HYQQQMPIDE YPERPGEKEC EYFMKNGDCK 420 FKSYCKFDHP KNRASKCVLS PMGLPLRPEE IACSYYSRYG ICKFGPACRY DHPPNSGSSI 480 SGVVRMGSHG NVRQGLIQQE V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 3e-89 | C3H family protein |