PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026381894.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 503aa    MW: 56253.9 Da    PI: 7.3741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026381894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.6e-1075100126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f rtG C+yG +C+++H+
  XP_026381894.1  75 PGEADCAHFVRTGSCRYGLKCRYNHP 100
                     57899********************9 PP

2zf-CCCH33.76.2e-11161186126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +++rtG C+yG +C+++H+
  XP_026381894.1 161 PGEPDCGHYLRTGACRYGLNCRYNHP 186
                     5789*********************8 PP

3zf-CCCH31.43.3e-10213238126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++r G CkyG +C+F H 
  XP_026381894.1 213 PGQVECKYYLRPGGCKYGTTCRFQHI 238
                     5789*********************5 PP

4zf-CCCH28.92e-09260284226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C++++r+G Ck+  +C+F+H+
  XP_026381894.1 260 GETECPHYMRNGSCKFALNCRFHHP 284
                     7789********************8 PP

5zf-CCCH24.74.2e-08408433227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C +f+++G Ck+ + CkF H++
  XP_026381894.1 408 GEKECEYFMKNGDCKFKSYCKFDHPK 433
                     7899********************96 PP

6zf-CCCH32.81.2e-10454476527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++r+G+Ck+G+ C++ H+p
  XP_026381894.1 454 ACSYYSRYGICKFGPACRYDHPP 476
                     6********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    
MVSIKELEDG DERLVFGSDS STSETAAAAV DVSVDDISLE GKIDNLGLGI KGKVSSFQRP  60
HDDENHNQNN HPVRPGEADC AHFVRTGSCR YGLKCRYNHP TRNKKVQVGN GKDKETEGFK  120
ERQWQLNRGF ERKQSQSWGD SAIEEEEEAE VNGSLHHPVR PGEPDCGHYL RTGACRYGLN  180
CRYNHPSRSK RQVHSSSVSH EPDQEKEGYE ETPGQVECKY YLRPGGCKYG TTCRFQHIQE  240
NPAVASTLDL NFLGLPVRPG ETECPHYMRN GSCKFALNCR FHHPNPTDVG VRDPHLRYQN  300
CRPSPVPSSV LSQPGVPFWS MARTSNETMV SYMDAAPSYA PLLSAPQGVH PSMEWNGYLP  360
PQQNPMYPPA VNMGPPVPLI LNGPSKKTGG FAHYQQQMPI DEYPERPGEK ECEYFMKNGD  420
CKFKSYCKFD HPKNRASKCV LSPMGLPLRP EEIACSYYSR YGICKFGPAC RYDHPPNSGS  480
SISGVVRMGS HGNVRQGLIQ QEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-89C3H family protein