PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026380691.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 406aa MW: 44802.8 Da PI: 9.2316

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026380691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45.4	1.3e-14	331	355	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd C+FaHg XP_026380691.1 331 KTELCNKWQETGVCPYGDHCQFAHG 355 9***********************8 PP
2	zf-CCCH	23.1	1.3e-07	368	392	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr + +G+C+yG rC+F H XP_026380691.1 368 YKTEVCRMVLNGGFCPYGHRCHFRH 392 9**********************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MQKNDSSKSQ DSSSSMKSSI DYQTPIRSPS NAEYYYVPAS PNHKSSSSGG DSRFSSQNSS 60 TFPPKSSICN SIYLTPPSSS SSSNEENNQI TKEDRLYLAR VILLYEQLMD RYELCWSYLE 120 DSSRKVDILS QENAALRLLN RDLINRLSLS TEVSGNHQKN HRSAYISSGF PTLSIINDFP 180 SLSIGDNGGS TGGGGGPNTK NDNRVAPSRE APVTSPTSVI GNNSKGFDEK PVQVQADRVS 240 LPKSISIRSS AYLKMNQSNN PAATNTTAPS SNKTANRLRV ASKPFIPSTA PRVNLPTVPA 300 VGENKKGVDD QKKKKEEDPL ELDVYNQGMS KTELCNKWQE TGVCPYGDHC QFAHGIRELR 360 PVIRHPRYKT EVCRMVLNGG FCPYGHRCHF RHALTDQEKR TGITHS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MQKNDSSKSQ DSSSSMKSSI DYQTPIRSPS NAEYYYVPAS PNHKSSSSGG DSRFSSQNSS  60
TFPPKSSICN SIYLTPPSSS SSSNEENNQI TKEDRLYLAR VILLYEQLMD RYELCWSYLE  120
DSSRKVDILS QENAALRLLN RDLINRLSLS TEVSGNHQKN HRSAYISSGF PTLSIINDFP  180
SLSIGDNGGS TGGGGGPNTK NDNRVAPSRE APVTSPTSVI GNNSKGFDEK PVQVQADRVS  240
LPKSISIRSS AYLKMNQSNN PAATNTTAPS SNKTANRLRV ASKPFIPSTA PRVNLPTVPA  300
VGENKKGVDD QKKKKEEDPL ELDVYNQGMS KTELCNKWQE TGVCPYGDHC QFAHGIRELR  360
PVIRHPRYKT EVCRMVLNGG FCPYGHRCHF RHALTDQEKR TGITHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	6e-52	C3H family protein