PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_026379545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 48855.4 Da PI: 8.1323 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 111 | 132 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C++++ +C++G++CkF H+ XP_026379545.1 111 TICKYWMD-NECSFGESCKFLHP 132 68******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence |
FNYRRSKSVK LWDFDSRKRI HNRPAGERGV PTKDIVCKYW KAGRCTSNPC QYRHSELPQS 60 SSNIRIQQPS DQGNFSGSCS FQRRKQNTYN RAPPSYWGRD HDQGGAVNGK TICKYWMDNE 120 CSFGESCKFL HPWFAGDDFT MLAQLAGHEK EKVISGIALP TGTNKLKLYS GSKDGTVRVW 180 DCQTGHCSAV INLGSEVGCV ISEGPWVFVG IKNCVKAWNT QTNRELSLGG PSGQVYALVV 240 GNEMLFAATQ DGSILVWKFV AATNGFEPAA ALKGHGASVL TLVIGANRLY SGSMDNTIRV 300 WELETLQCIH TLTDHTSVVM SVLCWDQYLL SCSLDKTMKV WALTESGKLE VIYNREEHGL 360 LALSGMPDAQ GKPVLICSCN DNTARLYDLP LFTEGGKIYA KEEIRAIQTA PGGLFFTGDG 420 NGDLKVWKWT EQSPPAAATI HQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 1e-172 | C3H family protein |