PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026378258.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 421aa MW: 46841.9 Da PI: 8.7772

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026378258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H XP_026378258.1 254 YKCTTCNKYFPSYQALGGHRASH 276 9***********99999998887 PP
2	zf-C2H2	12.9	0.00033	334	356	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+Fs+ L H r+H XP_026378258.1 334 HECPICFKVFSSGQALGGHKRSH 356 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MDSQSDNEAT APKRRRSKRT RYKNTNTIIT PSTNNNHNNT TSCLSVENSS VSEISNEQEE 60 VAMSLMMLSR DSTGYSRSEL NCLVESSDNN SLFLEAKSSS LIKRTSENEL NNVNLNEKKK 120 LKGKKKLGVT RFDGKRSELG GCYGSGFSRN GELEVSASFG EEGEFKRPKF DDEFENSSYT 180 RNRVSSKNAR AELGKNLIRE VENQSSFKYG KFNSSKRAKS DLYEDEFDRV SRKKAKYDGS 240 DSEFCKSSSK KSKYKCTTCN KYFPSYQALG GHRASHKKIK GCSASKVDFS ETSIETDLSP 300 DPTADIKSCN NDNVSVFEVT ASAETSPALK KNKHECPICF KVFSSGQALG GHKRSHLVGG 360 SDTRSTPTIV LPQKLPVMRD LLDLNLPAPN DEETNTGDMG YEPWWVGNSH KHDQLVGLIS 420 N

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MDSQSDNEAT APKRRRSKRT RYKNTNTIIT PSTNNNHNNT TSCLSVENSS VSEISNEQEE  60
VAMSLMMLSR DSTGYSRSEL NCLVESSDNN SLFLEAKSSS LIKRTSENEL NNVNLNEKKK  120
LKGKKKLGVT RFDGKRSELG GCYGSGFSRN GELEVSASFG EEGEFKRPKF DDEFENSSYT  180
RNRVSSKNAR AELGKNLIRE VENQSSFKYG KFNSSKRAKS DLYEDEFDRV SRKKAKYDGS  240
DSEFCKSSSK KSKYKCTTCN KYFPSYQALG GHRASHKKIK GCSASKVDFS ETSIETDLSP  300
DPTADIKSCN NDNVSVFEVT ASAETSPALK KNKHECPICF KVFSSGQALG GHKRSHLVGG  360
SDTRSTPTIV LPQKLPVMRD LLDLNLPAPN DEETNTGDMG YEPWWVGNSH KHDQLVGLIS  420
N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	19	PKRRRSKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	7e-21	C2H2 family protein