PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026377549.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 357aa    MW: 38643.4 Da    PI: 7.4381
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026377549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.32.9e-091939425
                    ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                     +C+f+++ G C++G rCkF H
  XP_026377549.1 19 TICKFWMA-GKCSFGKRCKFLH 39
                    68******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MDVNRLGGGG GAVCIHWRTI CKFWMAGKCS FGKRCKFLHQ WFVSDDFTML AQLAGHEKKA  60
ITGHEENKAI TGIAFPMGSN KLYSGSKDGT LQVWDCQTGK SAAVISLGSE VGCVISEGPW  120
VVAGINKSVK AWNIQTHNEL SLSGPSGLVY ALAVEKEMLF AGAQDGSILV WKFVAATNGF  180
EPAAALKGHS ASVLTLVVGN KILYSGSMDS TIRLWALETL QCIYTLTDHT SPVMSVLCWD  240
QFLLSCSLDK TIKVWAKTES GKLEVTYTKQ EEHGLLALSG MPDAQGKPVL LCSCNDNTVH  300
LYDLPSFKER GKICAKGETR AIHTAPGGLF FTGDGNGELK VWKWNEQSPE AATTIQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-150C3H family protein