PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM91238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LSD
Protein Properties Length: 596aa    MW: 66833.3 Da    PI: 4.0404
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM91238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.15e-12504528125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Cr lLsY rGA++V+C++C+tV
  OWM91238.1 504 CGSCRRLLSYIRGARYVQCSCCQTV 528
                 ************************9 PP

2zf-LSD142.88.5e-14542566125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 C++C +lL+YP+GApsV+C++C++V
  OWM91238.1 542 CSSCAVLLMYPYGAPSVKCSSCHFV 566
                 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    
MEITEEVRAM IEGDEAVEQR LREGIGSEEL VEEENGGNQC KQSAKERQVE DGIQREELAE  60
EVEMNNKYES NGVVEQVRSG IEGTESIDEK INNGKNSNGV VNEVRSVVEG EESVEEEING  120
NESNGVVEEV RDRTESNESV ERPVERMETD EAMEEGDKKR MKADRAAEED EGRTKSSGLE  180
EEKKERIGSA ELAEDNEERI AIGEAVDGER GQRESNELVE EEREAVESEE LVGEEEEERM  240
ETDEVVAEER GRMENNALAE EGRERIEPVE AVEDERTERI DPHEPMQEER RERVEHDESM  300
EELRDKVECE VMVQQERVME ATIEPREEEG LQSGSLVAPL PQSTNPPLST IEVAVKQEEQ  360
VEALEEKVKD EEQDNVEGMA MKEAARVENQ MELKVEPQEE EGEEGLPPGF HSGESSPCSK  420
KVTVKEEVVG KEDVKMKVEE VDGDEEDEGP PPGYQLPPTQ ADVLPPAAKS ISPPQPPSSQ  480
QLRPPMAEAP RPPAPAYEMA QMVCGSCRRL LSYIRGARYV QCSCCQTVNF VLEEHQVGQV  540
KCSSCAVLLM YPYGAPSVKC SSCHFVTEIG VCYLFFYCTT NLEFSCAPTH SERGRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-32LSD family protein