PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90601.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SBP

Protein Properties

Length: 391aa MW: 42021 Da PI: 8.3652

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131	4.1e-41	95	171	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC adls+++eyhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+++efDe+krsCr+rL++hn+rrrk+q+ OWM90601.1 95 CLVDGCYADLSSCREYHRRHKVCELHSKTPEVTIGGHKQRFCQQCSRFHSMEEFDEGKRSCRKRLEGHNRRRRKPQP 171 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MDWNLKTPSW DFTEFAQDTL PNIGGVSGVS SSFGGNDPKG DFSVDLKLGQ VSNPGNEPAA 60 AKWKVGNIVS KKVSSPLGSI KRPRGNNNGA QVVSCLVDGC YADLSSCREY HRRHKVCELH 120 SKTPEVTIGG HKQRFCQQCS RFHSMEEFDE GKRSCRKRLE GHNRRRRKPQ PDPLIRPVNC 180 LSNYQGTRLS PFSNSHVYPS AALGGNPAWV GVDNPSNAEG ALYNQRHQQM PFLGIQSLLP 240 GSSSGIYSGG GGKQFALLQG HQTAPETLSV SQPFHPRAIA ISSESGSGSN GNNNMFCDGL 300 LTLQVRDSDC ALSLLSSPQM QTPGLGIAKP LGPPPRLLGG NLSQGLVPVD SVLVSSHGNE 360 TNIQCHGGIF MGHNGSPGDD HAPQTFPFQW D

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MDWNLKTPSW DFTEFAQDTL PNIGGVSGVS SSFGGNDPKG DFSVDLKLGQ VSNPGNEPAA  60
AKWKVGNIVS KKVSSPLGSI KRPRGNNNGA QVVSCLVDGC YADLSSCREY HRRHKVCELH  120
SKTPEVTIGG HKQRFCQQCS RFHSMEEFDE GKRSCRKRLE GHNRRRRKPQ PDPLIRPVNC  180
LSNYQGTRLS PFSNSHVYPS AALGGNPAWV GVDNPSNAEG ALYNQRHQQM PFLGIQSLLP  240
GSSSGIYSGG GGKQFALLQG HQTAPETLSV SQPFHPRAIA ISSESGSGSN GNNNMFCDGL  300
LTLQVRDSDC ALSLLSSPQM QTPGLGIAKP LGPPPRLLGG NLSQGLVPVD SVLVSSHGNE  360
TNIQCHGGIF MGHNGSPGDD HAPQTFPFQW D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	169	KRSCRKRLEGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-63	SBP family protein