PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM90567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 48100.7 Da PI: 6.071 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.1 | 4.8e-11 | 126 | 149 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C f+ +tGtCk+G+ CkF+H+ OWM90567.1 126 AEDCAFYIKTGTCKFGSLCKFNHP 149 689********************9 PP | |||||||
2 | zf-CCCH | 32.6 | 1.3e-10 | 176 | 200 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG CkyG Ck+ H++ OWM90567.1 176 RIECKYYLRTGGCKYGKACKYDHPR 200 568********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 3.9e-11 | 221 | 245 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ OWM90567.1 221 GEKECPYYMRNGSCKYAANCRFNHP 245 7899********************9 PP | |||||||
4 | zf-CCCH | 25.4 | 2.4e-08 | 365 | 391 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ff++tG Ck+ ++Ck++H++ OWM90567.1 365 PGQPDCAFFLKTGDCKFKSNCKYNHPK 391 5789*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence |
MAASEESAVA VGHPGDDLGL GCRPSPDPQH APPDLDHEAE NSLSDELLRL VLKESEEAAR 60 LQAADSQEGG AQSGIVYNHG STDNNNTGWE DEKEGERAGE VDDTSEERET GTGVGRYNSF 120 PVRPGAEDCA FYIKTGTCKF GSLCKFNHPV RRRNPHVSAA RERVNVKEEL MDKTGRIECK 180 YYLRTGGCKY GKACKYDHPR TKPSVTPVTE LNFLGLPIRP GEKECPYYMR NGSCKYAANC 240 RFNHPDPTAS GAGGGSGAGT GTDLLGGYGN GSSATLKGLS QPVASWSAPS GTLNETAPFV 300 PAVYPPIGGV APQKAEWSTY QVPVYPPERT MLPPQAYMGK NLGTEATAYT NNKKQMINDE 360 FPERPGQPDC AFFLKTGDCK FKSNCKYNHP KSRIPSSSPV PLSDKGLPLR PVSVLSISLL 420 GLSDLTCCKS CAILPPDWNS SDLEER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-98 | C3H family protein |